Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0566 ATGGATCCGAACCCCGGAACCTTTCCTATCCTCTCCTACGTCATGAGTCGCCTCCCTTCTCTGGTCTCTACTTCTAGACCCTCCACCTCCGCTGAATTCGACATCGAACAGCCTCATCCTCTGCCGCCGCCACCCCATCTTCCTTCATCTTCTTCACTTGAATCTGAAATTGTGGGCAAAATGCCTCAACTTACTGATCCCAAACTCTTGGCTGCCATGACCCGCGCCGTCTCCGAGGTCGCCCAGACCCGATCAGTACTCAAGCTCATTGGGGATCGACCCTACCACGAAGATGTCGATCGTGCAAAGGCCAAGCTTGCGGATATTGAAGCCCTTTTGTCCAAGCAACTTGAGGAGATTGTGCGGTCCCCGAGGCCTGAGAATGTTGACATCCTTCAATGGCGGGCTCATCAAGCCGAAAAAGAGAAGGAGTGCAGGGAATCAGCGGAGAAAGAGAAGCGGCCGTATAAATCACTCTTACAGTTGGACGAGATGCACGATGCTTATGAGAAAATGCTTACGGATGCGGAGAAGAGGCTGGTGAAAATTTATGAGTCTGATGGGAAAGTAGCTGATAGTGCGGAGGGTGAGGAAGGTGAGCATGTTGGGGAGGAGGTTAACGAAGAGGTTGTGGGGATACTACGGGAGGCTCATGGAAAGGGGATGGACCGATTGGAACTTTCAGGGCGGCGGTTAAGGTTATTGCCCGAGGCCTTTGGGCGAATTCCTGGCTTGGTTGCGTTTGATCTTTCGAACAATCAGCTCGAGGTGATCCCTGACTCAATAGCCGGGTTGCAAAGTCTTGAGGAGCTTAACGTCTCTTCAAATCTTTTGGAGTCTCTTCCTGATTCAATTGGCTTGTTACAAAAGTTGAAATTTCTGAATGTCTCTGGGAACAAGCTAAGTGCCCTTCCTGATTCCATCTGTCATTGCAGGTCACTGGTGGAGCTTGATGTAAGCTTCAATGGGCTGACATATTTGCCTACAAACATTGGACTTGAACTGGTGAACTTACAGAAGCTGTCAATTCAATTGAACAAGATTCGGTCTCTTCCATTGTCTGTTTGTGAAATGAGGGCCTTGCGCTATCTAGATGCTCATTTTAATGAGCTTCATGGGCTTCCTATTGCTATAGGGAAATTGACTAATCTTGAAGTTCTCAACCTGAGCAGTAATTTCACTGACCTAAGAGAACTTCCCGATACATTTGGTGATCTGAATAACCTCAGGGAATTGGATCTCAGCAACAATCAGATTCATGCGCTTCCAGATACATTTGGCCGCCTCGACAATCTGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCAAAGGAAATTGTAAATGAAGGGGCTGAAGCCATAAAAAATTTCATGGCTAAGAGGTGGGTTGATATATTGCTTGAGGAAGAAAGGAAAAGCCGTGAAATTCAGGAACTGGCAGAGGCTGGCTGGTTAACACGAGGCACCTCCTGGTTGAAGAATTATGCATCTAATGTTTCTGGAAGTGTTACCGAGTATCTGGGATCTGCCATAGGATCACCTAGGACTCCTAGAGATCCTTGTCTTGATCAGCAGCTTTAA 1590 0.478 MDPNPGTFPILSYVMSRLPSLVSTSRPSTSAEFDIEQPHPLPPPPHLPSSSSLESEIVGKMPQLTDPKLLAAMTRAVSEVAQTRSVLKLIGDRPYHEDVDRAKAKLADIEALLSKQLEEIVRSPRPENVDILQWRAHQAEKEKECRESAEKEKRPYKSLLQLDEMHDAYEKMLTDAEKRLVKIYESDGKVADSAEGEEGEHVGEEVNEEVVGILREAHGKGMDRLELSGRRLRLLPEAFGRIPGLVAFDLSNNQLEVIPDSIAGLQSLEELNVSSNLLESLPDSIGLLQKLKFLNVSGNKLSALPDSICHCRSLVELDVSFNGLTYLPTNIGLELVNLQKLSIQLNKIRSLPLSVCEMRALRYLDAHFNELHGLPIAIGKLTNLEVLNLSSNFTDLRELPDTFGDLNNLRELDLSNNQIHALPDTFGRLDNLVKLNLEQNPLELPPKEIVNEGAEAIKNFMAKRWVDILLEEERKSREIQELAEAGWLTRGTSWLKNYASNVSGSVTEYLGSAIGSPRTPRDPCLDQQL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0566 529 FunFam Plant intracellular Ras-group-related LRR protein 9 141 326 - -
Acco13g0566 529 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Acco13g0566 529 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Acco13g0566 529 PANTHER LEUCINE-RICH REPEAT-CONTAINING 223 375 - -
Acco13g0566 529 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515
Acco13g0566 529 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Acco13g0566 529 SUPERFAMILY L domain-like 224 446 - -
Acco13g0566 529 Coils Coil 159 179 - -
Acco13g0566 529 Coils Coil 99 119 - -
Acco13g0566 529 SMART LRR_bac_2 288 307 - -
Acco13g0566 529 SMART LRR_bac_2 265 284 - -
Acco13g0566 529 SMART LRR_bac_2 242 261 - -
Acco13g0566 529 SMART LRR_bac_2 311 330 - -
Acco13g0566 529 SMART LRR_bac_2 406 425 - -
Acco13g0566 529 SMART LRR_bac_2 381 402 - -
Acco13g0566 529 SMART LRR_bac_2 335 354 - -
Acco13g0566 529 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Acco13g0566 529 MobiDBLite consensus disorder prediction 25 54 - -
Acco13g0566 529 Gene3D Ribonuclease Inhibitor 156 338 IPR032675 -
Acco13g0566 529 FunFam Plant intracellular Ras-group-related LRR protein 2 330 502 - -
Acco13g0566 529 Gene3D Ribonuclease Inhibitor 339 462 IPR032675 -
Acco13g0566 529 SMART LRR_typ_2 429 452 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 242 264 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 265 287 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 312 334 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 335 358 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 406 428 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 288 311 IPR003591 -
Acco13g0566 529 SMART LRR_typ_2 381 405 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0566 Acco-ChrAcco13 4079505 4082117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0566 224 466 Receptor kinase-like Gene Family AT5G07180 31.250 6.87e-12 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2525 04 42143782 42146139 Acco13g0566 13 4079505 4082117 CCT
Acco13g0566 13 4079505 4082117 Acco13g0566 13 4079505 4082117 ECH