Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2525 ATGGATCCGAGCCCTGGAAAATTCCCTCTTCTCTCCTCCCTCATGTCCCGCCTCCCTTCTTTCACTACCGCCGCCGCTTTCAATTCTGAGCTCTACGATATCGAACAGCCCCGCCTCCCTCCACCGTCCGATTCATCTTCGTCATCGTCTTCCGGTATCAAAGATCCTGAACTAATTGCCCAGATGCCCGGCATCAGTGACCCAGAACTGTTGGCTTCCATCACACGCACCGTCTACGACATCGCTCAGACCCGATCCATGCTCCGGGTCCTCGGCGACCGACCCGACCATGAATCCCTCGACAAAGCCAAGGCCAAGCTCGCTGACTTGGACGCCCATTTGTCCAGACAGCTGGAGGAGATCGTGCTCTCGCCGAGGCCTCCTCATCTGGAAAGCCAGCAATGGCGGAGTCATCAGGCGGAGAAAGAGAAGGAGTGCAGAAAATTGGCAGAGGATGAGAAGCGAGTGTACAAAGCAGTGATACAATTGGATGAGATGCACGATGCGTATGAGAAATTGCTCAAGGATGCTGAGAAAAGACTGGAAGCGATTTACTACTCGCCGGATGAAGCCGCCGCCGCAGATGCGGAGGAAGAGAAGTCGGAGATAGAGGAGGTGAATGAAGAGGTTGTTGGGATTCTGCAAAAGGCCTATGGACAAGGGATCGAGCGAATTGATCTTTCGAATCGCAGTCTGAGATTGCTTCCCGAAGCTTTTTGGCGGATTTCTGGCTTGCTGACCCTTGATGTTTCCACCAATCAACTGACGGCGATTCCTGACTCAATAGCTGGATTGCAAAATCTCGAGGAGCTCAACTTATCTACAAATCATTTGGAGTCACTTCCGGATTCAATTGGGTTGCTTTATAAGTTGAAAATCCTCAATGTCTCTGGAAACAAACTCACCTCATTTCCTGACTCCATCTCCCAGTGCAGGTCATTGGTGGAGTTGGATGCTGGGTACAATAGTCTCAAGTATTTGCCTACAAACATTGGGTATGAATTACAGAACTTACAGAAGCTGTTGATTCATCTGAACAAACTTCGGTCGCTTCCCTCATCCATTTGTGAGATGACATCCCTGCGCTATCTAGATGCCCATTTCAATGAGCTGAGTGGACTTCCAAGAGCGTTTGGAAGATTGACTAACCTTGAGGTGTTGAACCTGAGCAGTAATTTTGCCGACCTTCAAGAACTTCCAGCGACGTTCTGCGATCTGATTAACCTCAAGGAGCTGGATCTTAGCAACAACCAGATCAGTGCACTTCCAGATGCATTTGGTCGCCTGGAAAATTTGAAGAAGCTGAACCTAGATCAGAATCCTCTGGAAGTGCCACCAAAAGAGGTGGTGAGGCAAGGAGTTGAACAAGTGAAGAATTATATGAGGATGAGGTTGGTGAAGAAATTAAACGAGGAAGAAAGAAACAGGGTGGCGATGCAGGAACAAACCTCGATGGGCTGGTTAACACGAAGCACCTCCTGGTTGAAGAACGTCTCCGAGAATGTTGCAGAATATGTCACATCTCCTAAGAGTAATCCCAAAGAGGCTTACCTTAACCAGCAGCTATAA 1569 0.4895 MDPSPGKFPLLSSLMSRLPSFTTAAAFNSELYDIEQPRLPPPSDSSSSSSSGIKDPELIAQMPGISDPELLASITRTVYDIAQTRSMLRVLGDRPDHESLDKAKAKLADLDAHLSRQLEEIVLSPRPPHLESQQWRSHQAEKEKECRKLAEDEKRVYKAVIQLDEMHDAYEKLLKDAEKRLEAIYYSPDEAAAADAEEEKSEIEEVNEEVVGILQKAYGQGIERIDLSNRSLRLLPEAFWRISGLLTLDVSTNQLTAIPDSIAGLQNLEELNLSTNHLESLPDSIGLLYKLKILNVSGNKLTSFPDSISQCRSLVELDAGYNSLKYLPTNIGYELQNLQKLLIHLNKLRSLPSSICEMTSLRYLDAHFNELSGLPRAFGRLTNLEVLNLSSNFADLQELPATFCDLINLKELDLSNNQISALPDAFGRLENLKKLNLDQNPLEVPPKEVVRQGVEQVKNYMRMRLVKKLNEEERNRVAMQEQTSMGWLTRSTSWLKNVSENVAEYVTSPKSNPKEAYLNQQL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2525 522 Coils Coil 189 216 - -
Acco04g2525 522 MobiDBLite consensus disorder prediction 32 55 - -
Acco04g2525 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING 298 465 - -
Acco04g2525 522 FunFam Plant intracellular Ras-group-related LRR protein 9 142 326 - -
Acco04g2525 522 SMART LRR_bac_2 360 377 - -
Acco04g2525 522 SMART LRR_bac_2 288 307 - -
Acco04g2525 522 SMART LRR_bac_2 311 330 - -
Acco04g2525 522 SMART LRR_bac_2 406 425 - -
Acco04g2525 522 SMART LRR_bac_2 335 354 - -
Acco04g2525 522 SMART LRR_bac_2 242 261 - -
Acco04g2525 522 SMART LRR_bac_2 265 284 - -
Acco04g2525 522 SMART LRR_bac_2 381 402 - -
Acco04g2525 522 MobiDBLite consensus disorder prediction 40 55 - -
Acco04g2525 522 Coils Coil 462 482 - -
Acco04g2525 522 Coils Coil 100 120 - -
Acco04g2525 522 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Acco04g2525 522 PRINTS Leucine-rich repeat signature 265 278 - -
Acco04g2525 522 PRINTS Leucine-rich repeat signature 245 258 - -
Acco04g2525 522 FunFam Plant intracellular Ras-group-related LRR protein 2 330 502 - -
Acco04g2525 522 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Acco04g2525 522 Coils Coil 160 180 - -
Acco04g2525 522 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Acco04g2525 522 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Acco04g2525 522 Pfam Leucine rich repeat 401 442 IPR001611 GO:0005515
Acco04g2525 522 Pfam Leucine rich repeat 337 392 IPR001611 GO:0005515
Acco04g2525 522 SUPERFAMILY L domain-like 219 446 - -
Acco04g2525 522 SMART LRR_typ_2 358 380 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 406 428 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 381 405 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 312 334 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 242 264 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 429 452 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 335 356 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 265 287 IPR003591 -
Acco04g2525 522 SMART LRR_typ_2 288 311 IPR003591 -
Acco04g2525 522 Gene3D Ribonuclease Inhibitor 330 502 IPR032675 -
Acco04g2525 522 Gene3D Ribonuclease Inhibitor 131 326 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2525 Acco-ChrAcco04 42143782 42146139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2525 307 480 Receptor kinase-like Gene Family AT5G46330 29.902 5.68e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2525 04 42143782 42146139 Acco13g0566 13 4079505 4082117 CCT
Acco04g2525 04 42143782 42146139 Acco04g2525 04 42143782 42146139 ECH