LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco12g2117	ATGTCTGCAACTTTTTCACCAAAGTCAGCTCTTGAAAGATCTGATGGTACTGGGTCTTGTAAGAAGAGAGCCTCAAACAAGTTCAGGAGTTCTTTGTCAAGAAAGGGAAGGAGATCCAGCAAGGTCATGTCTGTTGAAATTGAGGATATCCGTGATGCCGAGGAGTCAGCAGTTGTGGAGAAGTTCCGTGAAGTTCTTGTATCAGAGGACCTTCTTCCTGCTAAGCAAGATGATTATCATACGATGCTGAGATTCCTTAAGGCCAGGAAATTTGATATTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCAAGTGGAGAAAGGAATTTGGTACTGACACAATTATGGAGGATTTTGTTTTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTGGATAAAGATGGACGACCCGTGTACTTCGAGAGATTAGGTCTAGTAGACTCAAACAAGATGATGCAAGTGACAACCTTAGAACGCTATATCAAGTACCATGTGAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGTTCAATTGCAGCAAAGAAGCACATTGATCAAAGTACAACCATCCTGGATGTGCAAGGAGTGGGGCTCAAGAACTTTAGCAAATCTGCTAGAGACCTTGTTACTGCCCTTCAGAAGATTGACGGCGATAATTATCCAGAGAGCTTGAATCGTATGTTCATAATCAATGCCGGTTCTGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAAACCACGGCAAAAATTAATGTTCTTGGCAACAAGTACCAGAGCAAATTACTTGAAATAATTGATGCAAGTGAATTGCCAGACTTTTTTGGAGGCACTTGCACCTGTGCTGATCAAGGAGGTTGTATGCTTTCTGATAAGGGTCCATGGAAGAATGAAGAAATATTAAGGAAGGTTCTAAATGGTGACCATAAAAGTTCAAGCAAAAGTGAGTCACCTGTAGTGGAAGAAGATAAGACAATGTCCGAGGTAGTTCCAGTGTCTGAGGCAACACCAGTTTCTGAGGAGCTGCCAGTGTCTGAAGAAATAGTGCCTACCAGTATCCACATCAGTCACACAGAAGAAACTCCAGTGCATAATGAGGTCCCTGCCATCAAAGCTTGCAAATCTGAGGACTTAGTCCCAGTGTCTGACAGAATGGTCCCACTGTCTGATAAAATGGCTATGAAAAAAGTTGAAGACAGCGAGAGATTAGCGTTATCAAAAGCTGGAATAGATACATTAATCAATATGGCTGATGCTTACAAGCTCCATGAGAAGTTCAACTATCAGCTTTTCACTGGGGTCATGGCCTTTGTAATGGGAATCCTGACAATGGTCAAAATGACACGAAACATGCCCAAGAACGTCACCAATGGCAACTTCTCCAACCCTAATAATTTCTGTGCTGAGCCCACGTATACAGGGCAGGCCCCTGCTAATAACAACGACCCCATGCCCACCATCTCTGCTGAAGAATTTATGGCTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAATATACCTGCTTACATGCCTCCCGAGAAGGAGGAAATGCTCGTTGCTGCTATGAACAGAGCCGATGTATTGGAAAAAGAACTCATGGCTACCAAGAAGTCCTTGGAGGATTCACTCGCCCAACAAGAGGAGCTATTAGCTTATATTGACAAGAAGAAGAAGAAGAAATGGGTACACCACCAAAACCATATAACGTTGCTCACAGTTTTCGTTTACTGA	1788	0.4262	MSATFSPKSALERSDGTGSCKKRASNKFRSSLSRKGRRSSKVMSVEIEDIRDAEESAVVEKFREVLVSEDLLPAKQDDYHTMLRFLKARKFDIEKTKQMWSDMLKWRKEFGTDTIMEDFVFKEQSEVLKYYPQGHHGVDKDGRPVYFERLGLVDSNKMMQVTTLERYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPDFFGGTCTCADQGGCMLSDKGPWKNEEILRKVLNGDHKSSSKSESPVVEEDKTMSEVVPVSEATPVSEELPVSEEIVPTSIHISHTEETPVHNEVPAIKACKSEDLVPVSDRMVPLSDKMAMKKVEDSERLALSKAGIDTLINMADAYKLHEKFNYQLFTGVMAFVMGILTMVKMTRNMPKNVTNGNFSNPNNFCAEPTYTGQAPANNNDPMPTISAEEFMAVLKRMAELEEKMVTMNIPAYMPPEKEEMLVAAMNRADVLEKELMATKKSLEDSLAQQEELLAYIDKKKKKKWVHHQNHITLLTVFVY	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco12g2117	595	CDD	SEC14	122	292	IPR001251	-
	Acco12g2117	595	Gene3D	-	111	322	IPR036865	-
	Acco12g2117	595	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	19	576	-	-
	Acco12g2117	595	FunFam	SEC14 cytosolic factor	111	323	-	-
	Acco12g2117	595	Pfam	CRAL/TRIO domain	129	291	IPR001251	-
	Acco12g2117	595	MobiDBLite	consensus disorder prediction	321	355	-	-
	Acco12g2117	595	PRINTS	Cellular retinaldehyde-binding protein signature	283	292	-	-
	Acco12g2117	595	PRINTS	Cellular retinaldehyde-binding protein signature	250	269	-	-
	Acco12g2117	595	PRINTS	Cellular retinaldehyde-binding protein signature	81	103	-	-
	Acco12g2117	595	Coils	Coil	544	568	-	-
	Acco12g2117	595	SMART	sec14_4	123	294	IPR001251	-
	Acco12g2117	595	Pfam	CRAL/TRIO, N-terminal domain	77	102	IPR011074	-
	Acco12g2117	595	SUPERFAMILY	CRAL/TRIO domain	125	314	IPR036865	-
	Acco12g2117	595	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	123	297	IPR001251	-
	Acco12g2117	595	MobiDBLite	consensus disorder prediction	1	38	-	-
	Acco12g2117	595	Gene3D	-	18	110	-	-
	Acco12g2117	595	MobiDBLite	consensus disorder prediction	321	337	-	-
	Acco12g2117	595	SMART	CRAL_TRIO_N_2	78	103	IPR011074	-
	Acco12g2117	595	SUPERFAMILY	CRAL/TRIO N-terminal domain	52	119	IPR036273	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco12g2117	Acco-ChrAcco12	32667453	32672713	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco12g2117	84	288	Acyl Lipid Metabolism Gene Families	AT5G47730	30.435	7.70e-22	95.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco12g2117	12	32667453	32672713	Acco12g2117	12	32667453	32672713	ECH
	Acco01g2060	01	36413872	36419292	Acco12g2117	12	32667453	32672713	ECH