Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2060 ATGTCTGGCCCGCTGGATCGTTTCGCCAGACCTTGCTTTGAGGGATTCTCTGGAAGTGATGAAAGACGCGATAGGAGATCTGATTTTGAGAACTCTGAGGATGAAAGACGAACAAGAATTGGTTCTCTAAAAAAGAAAGCAATTAATGCATCTACCAAATTCAAGCATACTCTCAAGAAAAAGAGTGGCAGGAGAAAAAGTGATGGCCGGGTTAGTTCGGTTTCTATCGAGGATGTTCGGGATGTTGAGGAACTACAGGCTGTTGATGCCTTCAGACAATCATTGATTATGGATGAATTGCTTCCAGAAAGACATGATGATTACCATATGATGCTAAGGTTCCTGAAAGCAAGGAAATTTGATGTTGAAAAAGCGAAGCACATGTGGGCTGATATGCTCAAATGGAGGAAAGATTTTGGTGCTGACACTATTATGGAGGATTTTGAGTTTAAGGAGTTAAATGATGTCCTGGATTATTACCCTCATGGTCATCATGGTGTTGATAAGGAGGGAAGACCAGTTTATATTGAAAGACTTGGAAAGGTCGATCCTCACAAACTTATGCAAGTGACAAATCTGGAGAGATATGTAAAGTACCATGTACAAGGGTTTGAGAAAGTTTTTGCAATTAAGTTTCCTGCCTGCACCATTGCAGCCAAGAGGCACATAGATTCTAGCACCACTATCTTAGATGTTCAAGGCGTGGGTCTGAAGAACTTTTCAAAGTCTGCCCGGGAACTCATTATGCGATTGCAAAAGATTGATGGAGACAATTACCCTGAGACTCTCTTCCAAATGTTTATTATAAATGCTGGCCCTGGGTTCAGGCTACTGTGGAACACTGTCAAAACCTTCATTGATCCCAAAACAACTTCTAAGATCCATGTTCTTGGAAACAAGTACCAGAACAAATTGCTTGATATAATTGATGCCAGTGAGTTGCCAGATTTTCTTGGAGGCACCTGCACTTGTGCAGATCTGGGAGGATGCCTTAGATCTGACAAAGGGCCTTGGAAGAATCCTGAAATATTGAAGATGGTTCTCAAGTGTGGAGCCCGGGGAGCCAGGCAGGTAGTAAAAGTGCTAAACAGCGAAGGGAAGGTTATTGCATATGCAAAACCTCGATATCCTATGGTAAAAGGCAGTGATACATCCACTGCTGAATCAGGGTCTGAAGCAGAAGATGTTGCTTCTCCTAAAGCTATGAAGAGTTACACACATCTTAGGTTGACCCCTGTTCGTGAGGAAGCTAAGGTAGTTGGAGAGACAAGCTATGCTGGTAGCTTATCAGGGTATGATGAGTATGTTCCGATGGTGGACAAATCTGTTGATGCTACCTGGAATAAGCAACCATCTCTATCGAGATCTTGTACTTCTAAAGGATTGCCTCCTGTCGCCGAAGTTCAGATAACTGCAGGTGGGGTTCGACCACGAATTTGGGTGGCCTTGACTGTCTTCTTCTTAACCCTTATCACTCTCCTCCAATCAGTTGCACGTCGCATGATCAACAAGCACCCCACAATATCAGCCAATGGTGATCAGAGTACTTCTGATCCAACTCTTGATGTGACAAACAGGGACTGTCATCTTCCTTCACCATGTTCAGCAGCACATACAGAAGCAGACCAACTTTCCTTCATGCTAAAGAAATTGGCTGAGCTTGAAGAAAAGGTTGACACTCTCCAATCTAAGCCATCTGAGATGCCTAATGAGAAAGAGGAATTATTGAATGCTGCTGTCTGTCGTGTGGATGCTTTGGAAGCAGAGTTGATTGCTACTAAAAAGGCCCTCTATGAAGCCTTAATAAGGCAAGAGGAACTGCTTGCCTACATTGATCGTCAAGCAGAAGCAAAGTTACGGAAAAAGAAGTTTTGCTGGTGA 1881 0.4322 MSGPLDRFARPCFEGFSGSDERRDRRSDFENSEDERRTRIGSLKKKAINASTKFKHTLKKKSGRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDVEKAKHMWADMLKWRKDFGADTIMEDFEFKELNDVLDYYPHGHHGVDKEGRPVYIERLGKVDPHKLMQVTNLERYVKYHVQGFEKVFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFSKSARELIMRLQKIDGDNYPETLFQMFIINAGPGFRLLWNTVKTFIDPKTTSKIHVLGNKYQNKLLDIIDASELPDFLGGTCTCADLGGCLRSDKGPWKNPEILKMVLKCGARGARQVVKVLNSEGKVIAYAKPRYPMVKGSDTSTAESGSEAEDVASPKAMKSYTHLRLTPVREEAKVVGETSYAGSLSGYDEYVPMVDKSVDATWNKQPSLSRSCTSKGLPPVAEVQITAGGVRPRIWVALTVFFLTLITLLQSVARRMINKHPTISANGDQSTSDPTLDVTNRDCHLPSPCSAAHTEADQLSFMLKKLAELEEKVDTLQSKPSEMPNEKEELLNAAVCRVDALEAELIATKKALYEALIRQEELLAYIDRQAEAKLRKKKFCW 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2060 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Acco01g2060 626 MobiDBLite consensus disorder prediction 1 42 - -
Acco01g2060 626 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Acco01g2060 626 Coils Coil 544 564 - -
Acco01g2060 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 26 614 - -
Acco01g2060 626 CDD SEC14 153 321 IPR001251 -
Acco01g2060 626 Gene3D - 140 351 IPR036865 -
Acco01g2060 626 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Acco01g2060 626 SMART sec14_4 152 323 IPR001251 -
Acco01g2060 626 Gene3D - 64 139 - -
Acco01g2060 626 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Acco01g2060 626 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Acco01g2060 626 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Acco01g2060 626 SUPERFAMILY CRAL/TRIO domain 153 346 IPR036865 -
Acco01g2060 626 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Acco01g2060 626 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Acco01g2060 626 FunFam SEC14 cytosolic factor 140 352 - -
Acco01g2060 626 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2060 Acco-ChrAcco01 36413872 36419292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2060 86 317 Acyl Lipid Metabolism Gene Families AT5G47730 30.041 5.11e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2060 01 36413872 36419292 Acco01g2060 01 36413872 36419292 ECH
Acco01g2060 01 36413872 36419292 Acco12g2117 12 32667453 32672713 ECH