Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2469 ATGATTGGCAAGGAGAACTTGAGGACGGAGGACTTGAACTTGTGCTTTGAGCAACTTATGATGGTTGCAGGCGGTGGTAACGGTGGAAACAGTACTAGAGGAGTGAAGATGGAAGCCGGGGTGATCACCGAATGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGTCCCTAACTGATGATCAGACGGTGATCGCAGCTACTGGAGTCTGCCGTGGATGGAGAGATGTGGTTTGCTTCGCCCTTTCCCGTTTGTCACTCTCTTGGTGCAGGAAGAACATGAATAACTTGGTCCTGTCGCTTATGCCTAAATTTACAAAATTACAAATTTTAGTCCTTCGTCAAGACCAACCTCAACTAGAGGATAATGCTGTTGAGACTATCTCAAATTTCTGTCACGACCTGCAGACGCTGGATCTCAGCAAAAGTTTTAGGCTTACTGATTGGTCTCTGTATGCCTTAGCCCATGGATGCCCTGATCTTACAAATCTGAACATCAGTGGGTGCTCGGCATTTAGCGATGGTGCTCTGGCATACCTAGCCAGTTTCTGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGCATCAGACAATGCATTACAGGCTATAGGACATTATTGCAGGCAATTACAATCTTTGAACCTTGGATGGTGTGATAATGTTAGCGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAATACTTGACTTGTGTGCTTGTGTACGTATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGGTGTCCCCATCTGAGGTCCCTTGGGCTGTACTTTTGTCAAAACATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATCACAGGATGTGGGGGTCTGTGAAAGGAGTTAATAATGAAGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGCACAGCACTCACACCCTCCGCTGTTCAGGCCGTGTGTGATTCCTTCCCGGCGCTTCACACCTGCTCTGGCAGGCATTCACTCATCATGAGTGGCTGTTTGAGCCTGACCTCTGTGCATTGTGCTTGTGCTGTGCATTCGCATCGAGCAATGGCCTCTCTTCCATATCAAGCTCATTGA 1128 0.4645 MIGKENLRTEDLNLCFEQLMMVAGGGNGGNSTRGVKMEAGVITEWKDIPVELLMQILSLTDDQTVIAATGVCRGWRDVVCFALSRLSLSWCRKNMNNLVLSLMPKFTKLQILVLRQDQPQLEDNAVETISNFCHDLQTLDLSKSFRLTDWSLYALAHGCPDLTNLNISGCSAFSDGALAYLASFCRKLKCLNLCGCVRAASDNALQAIGHYCRQLQSLNLGWCDNVSDDGVTSLAAGCPDLRILDLCACVRITDESVIALANGCPHLRSLGLYFCQNITDRAMYSLAHSKVNHRMWGSVKGVNNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLSLTSVHCACAVHSHRAMASLPYQAH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2469 375 CDD F-box_AtSKP2-like 44 91 - -
Acco10g2469 375 SUPERFAMILY RNI-like 77 288 - -
Acco10g2469 375 Pfam Leucine Rich repeat 212 235 IPR001611 GO:0005515
Acco10g2469 375 Pfam Leucine Rich repeat 264 287 IPR001611 GO:0005515
Acco10g2469 375 PANTHER UNCHARACTERIZED 81 286 - -
Acco10g2469 375 SMART LRR_CC_2 159 184 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 106 132 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 212 237 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 306 331 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 264 289 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 185 211 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 80 105 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 133 158 IPR006553 -
Acco10g2469 375 SMART LRR_CC_2 238 263 IPR006553 -
Acco10g2469 375 Gene3D Ribonuclease Inhibitor 83 295 IPR032675 -
Acco10g2469 375 FunFam F-box protein SKP2B 80 298 - -
Acco10g2469 375 Gene3D - 42 82 - -
Acco10g2469 375 Pfam F-box-like 46 80 IPR001810 GO:0005515
Acco10g2469 375 SUPERFAMILY F-box domain 37 80 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2469 Acco-ChrAcco10 36071428 36073941 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2784 05 43008994 43013409 Acco10g2469 10 36071428 36073941 CCT
Acco10g2469 10 36071428 36073941 Acco10g2469 10 36071428 36073941 ECH