Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2440 ATGTCTCCCCTTACAGCCAGTGACTTGCAGCGAATATTTGAGAAGCTGGACATGAACGAGGATGGGTTGGTGAGCCTTGAAGAGCTCAAGTGGCTGCTGGACAGGAGAGGTTATGAGTTTAGCCCCGAAGAACTTGAATGTTTCGTCAGCAAACAGAAGCTGGACCTGAATGAATTCTTGCTCTTCTGGGAGTCCATATCGGAGCAGAGCAGTAACATAGGAGATGATGTGGAGAGTGACCTGGCGAAAGCGTTCGAGGTGTTTGACTTAGACGGAGATGGCTTCATCACCAGCCCTGAACTGGAGTGCGTGCTGAAGAGGCTTCGCTTATGGGACGAACAGAATGGAAGAGACTGCTCCGCCATGATTTGCGCCTTCGACACCAACTCAGATGGCCGCCTTGATTTCCAGGAGTTCAAGAACATGATGCTCCTTAATGACAGTCTCTGCTGGGTGGTCCTTAATGATTTTGTATACGAAGGCAAACACATACTACCACTGTCCTAA 507 0.4931 MSPLTASDLQRIFEKLDMNEDGLVSLEELKWLLDRRGYEFSPEELECFVSKQKLDLNEFLLFWESISEQSSNIGDDVESDLAKAFEVFDLDGDGFITSPELECVLKRLRLWDEQNGRDCSAMICAFDTNSDGRLDFQEFKNMMLLNDSLCWVVLNDFVYEGKHILPLS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2440 168 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Acco10g2440 168 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Acco10g2440 168 SUPERFAMILY EF-hand 7 149 IPR011992 -
Acco10g2440 168 Gene3D - 1 145 - -
Acco10g2440 168 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Acco10g2440 168 CDD EFh 80 143 IPR002048 GO:0005509
Acco10g2440 168 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Acco10g2440 168 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 143 - -
Acco10g2440 168 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Acco10g2440 168 SMART efh_1 8 36 IPR002048 GO:0005509
Acco10g2440 168 SMART efh_1 80 108 IPR002048 GO:0005509
Acco10g2440 168 SMART efh_1 118 146 IPR002048 GO:0005509
Acco10g2440 168 Pfam EF hand 9 30 IPR002048 GO:0005509
Acco10g2440 168 Pfam EF-hand domain pair 79 143 IPR002048 GO:0005509
Acco10g2440 168 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Acco10g2440 168 FunFam Calmodulin A 3 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2440 Acco-ChrAcco10 35892463 35892969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2440 2 144 EF-hand Containing Proteins AT1G21550 46.667 7.48e-39 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2761 05 42855966 42856430 Acco10g2440 10 35892463 35892969 CCT
Acco10g2440 10 35892463 35892969 Acco10g2440 10 35892463 35892969 ECH