Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1132 ATGGCCAACCACCAAAGGCATATCTTACAGTTTTTCGTCATTATAGTTTCTTTAGTTGCTTGTTCTTGTACTTTGCAAGAGGACCCGCAACATATTCTTCTTCATTCTGATGATTCACCTAATATGATTGATGATGGTGGGACATTCGATAACTTGATCAAGCAGAGCTCAGATGATCATTTGTGGTTGAAGATACTGGATAAGTTGGTTGGCCCTTCTCTTTCGTTTAACACGATTAATGTCAATGATTACGGAGCTGAAGGAGATGGTGTTACTGGCGACACAAAGGCATTCAAGAAGGCTTGGAAAGTTGCATGCTCTTCTTCTGGGGAAGCAGTTTCTCTTGTGGTGCCCAAGCAGAAGTACCTACTCAAGCCGATAAGATTCTCAGGGCCATGCAAATCTGACCATATCACAGTGCAGATTGATGGAGTGCTTGAAGCGTCTGATAATCCTTCAGACTACAAACATGATCCCACACACTGGCTTCAGTTTAAGAATGTGCAGAGTCTATCAGTTAAAGGTGATGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAGAAACTTCCCTGCAAGAATGCCCCTACGGCTCTAACGTTCTATAACTGCAAGAACTTGGTGGTTGAGAACTTGACGATAAAAGATGCACAACAAATTCACTTATCATTTCAGGACTCCATCTACGTTAGAGCTTCGGGTCTCACTGTGACTGCACCACAGGATAGTCTTAACACTGACGGAATTCATGTCTCTAATACACACAAGATCCAAATCTCAAGCTCTGTCATAGCAACTGGAGATGACTGTATATCAATTGTAAGTGGATCTCAGAATGTACAAGCTACAGATATAACATGCGGACCAGGCCATGGCATCAGCATTGGAAGCTTAGGGGCCAAACAAGCCGAAGCTTTTGTTTCTGACATAACAGTAAACAGAGCCAAGCTATCTGGAACTGAAAATGGAGTAAGAATTAAGACGTGGCAGGGTGGGTCGGGAAGTGCGAGCAACATCAATTTCCAGAACATAGAGATGAACAATGTGACCAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAGGATCCATGCAAAAAACAGGACTCAGCGGTTCAGATCAAGAATGTGTTATACCAGAACATAAAAGGCACGAGTGCTTCAGAAGTAAGCGTGAGGTTTGATTGCAGCGAGAACTTTCCATGCCAGGGGATTGTGATGCAGAACGTAGACTTGACACTTGAAACAGGGGAAGCTTCCAAAGCTTCATGTGACAATGTTCAAGTGTCCTACGTTGGACACGTAACCCCTCGCTGCCCAGAGCTAGGAAGCCCAATAACCAAGTGCCCTTTATCTCTCAACTCGGGCGTTAACACTCGCGCCAGTGCACTTTGCTTTCGTTGGCTAGGGTTTCTTTGGTAG 1446 0.4398 MANHQRHILQFFVIIVSLVACSCTLQEDPQHILLHSDDSPNMIDDGGTFDNLIKQSSDDHLWLKILDKLVGPSLSFNTINVNDYGAEGDGVTGDTKAFKKAWKVACSSSGEAVSLVVPKQKYLLKPIRFSGPCKSDHITVQIDGVLEASDNPSDYKHDPTHWLQFKNVQSLSVKGDGTINGNGNIWWQNSCKRNKKLPCKNAPTALTFYNCKNLVVENLTIKDAQQIHLSFQDSIYVRASGLTVTAPQDSLNTDGIHVSNTHKIQISSSVIATGDDCISIVSGSQNVQATDITCGPGHGISIGSLGAKQAEAFVSDITVNRAKLSGTENGVRIKTWQGGSGSASNINFQNIEMNNVTNPIIIDQNYCDQKDPCKKQDSAVQIKNVLYQNIKGTSASEVSVRFDCSENFPCQGIVMQNVDLTLETGEASKASCDNVQVSYVGHVTPRCPELGSPITKCPLSLNSGVNTRASALCFRWLGFLW 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1132 481 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Acco06g1132 481 ProSitePatterns Polygalacturonase active site. 291 304 IPR000743 GO:0004650|GO:0005975
Acco06g1132 481 PANTHER - 77 435 - -
Acco06g1132 481 Pfam Glycosyl hydrolases family 28 109 437 IPR000743 GO:0004650|GO:0005975
Acco06g1132 481 SUPERFAMILY Pectin lyase-like 72 451 IPR011050 -
Acco06g1132 481 Gene3D - 73 457 IPR012334 -
Acco06g1132 481 FunFam Polygalacturonase QRT2 69 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1132 Acco-ChrAcco06 7761149 7764087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1132 71 447 Glycoside Hydrolase AT3G07970 58.047 1.17e-150 435
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g1132 06 7761149 7764087 Acco02g1139 02 8312110 8317670 CCT
Acco06g1132 06 7761149 7764087 Acco06g1132 06 7761149 7764087 ECH