Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1139 ATGCAAAAATATAGTGAAGTAGCTTCGTCATGTACTCATGTTTGTTCTTGTCGAATAAAAGTTCTCATCTGTACTAAATCCTAAATTTGTACAGACCAGTACCTACGTATCCTATATATGATGATAATGGCCCTCCCAAAACATGTTCTTTCGTTGTTCTTAATGTTGTTCATCATTATTATTCCTTTTGTCCCTTGTTATGGTACCTCTCAAGAGGACCCACTAAAGATACACGGAGGTGGTGATTCTCCTTTCAACAACATCGATGATGGTGGGACACACAAGAAATTGATACAGCAAAGCACACAAGTATTGAACATAAATAGGTTTGTTAAGTTGGGTGTCACGTCTTCTTCAGCTTCCAAGCTTAATGTCAATGACTTCGGAGCTAAAGGGGATGGTAAAACTGATGACACAGAGGCTTTCAATAAGGCTTGGCAAGATGCATGTTCTTCTGGAAGAGACGTAATTCTTGTGGTGCCTTCTAATTATAACTATCTTCTCAAGCCTGTCAGATTCTCAGGTCCCTGCAATTCTAGAATTACTTTCCAGATTTCTGGGACAATTGAAGCATCAGAGAACTCATCGGATTACACTGAAGAAGACCCACAACACTGGCTCATGTTCGAGAGTCTTCAGAATGTAACAGTTCAAGGTGGTGGAACCATCAATGGAAATGGAGACACATGGTGGCAAAACTCCTGCAAAAAGAACCCAAGTCTTCCTTGCAAGAGCGCCCCCACTGCTGTGACTTTCTATGAGTGTAAGAATCTGATAGTGGAGAACTTGGTGATTAAAAATGCACAACAAATCCATGTGAACATTCAAGAATCCACGAACGTTAAGGTTTCTGGTGTTACAGTGAGTGCACCAGGGGATAGCCCCAACACTGATGGAATTCATATGACCAATACCAAAATTATCCAAATCTCACACTGCGTTATAGCCACAGGAGATGATTGTTTGTCCATAGAGAGTGGAACCCAAAATCTACTAGCCACAGACATAGCTTGCGGACCCGGACATGGTATCAGTATCGGAAGCTTAGGGGAGACCGGAACAGAAGAGCTTGTGTCAGGAATAACAGTGAATGGAGCTAATCTTTCTGGAACTACAAATGGAGTTAGAATAAAGACTTGGCCTGGAGGGTCAGGAAGTGCAAGCAATATCAAGTTTCAAAATATTGCCATGGAAAATGTGACTAACCCCATTATAATAGATCAGAACTACTGTGACCAGAAGACTCCATGCGAACAAGAGAAGTCAACGGTGAAGATCAGGAATGTGTTGTACGAGAACATAAAGGGAACGAGTGCTTCAGATGTTGCTGTGAGCTTGAACTGCAGCCAAAGCTTTCCCTGTCAGGGAATTGTGTTGCACAACATAGACCTCCGACATGAACAAGAAGCACAAATTCCTAAAGCTTTATGTCAAAGTGCTCTCTTGTCCTACGTTGGATCCGTTTCCCCACGTTGCCCATAG 1482 0.4217 MQKYSEVASSCTHVCSCRIKVLICTKSXICTDQYLRILYMMIMALPKHVLSLFLMLFIIIIPFVPCYGTSQEDPLKIHGGGDSPFNNIDDGGTHKKLIQQSTQVLNINRFVKLGVTSSSASKLNVNDFGAKGDGKTDDTEAFNKAWQDACSSGRDVILVVPSNYNYLLKPVRFSGPCNSRITFQISGTIEASENSSDYTEEDPQHWLMFESLQNVTVQGGGTINGNGDTWWQNSCKKNPSLPCKSAPTAVTFYECKNLIVENLVIKNAQQIHVNIQESTNVKVSGVTVSAPGDSPNTDGIHMTNTKIIQISHCVIATGDDCLSIESGTQNLLATDIACGPGHGISIGSLGETGTEELVSGITVNGANLSGTTNGVRIKTWPGGSGSASNIKFQNIAMENVTNPIIIDQNYCDQKTPCEQEKSTVKIRNVLYENIKGTSASDVAVSLNCSQSFPCQGIVLHNIDLRHEQEAQIPKALCQSALLSYVGSVSPRCP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1139 493 Pfam Glycosyl hydrolases family 28 150 471 IPR000743 GO:0004650|GO:0005975
Acco02g1139 493 PANTHER - 123 477 - -
Acco02g1139 493 ProSitePatterns Polygalacturonase active site. 335 348 IPR000743 GO:0004650|GO:0005975
Acco02g1139 493 Gene3D - 112 487 IPR012334 -
Acco02g1139 493 FunFam Polygalacturonase QRT2 109 493 - -
Acco02g1139 493 SUPERFAMILY Pectin lyase-like 121 492 IPR011050 -
Acco02g1139 493 SMART pbh1 255 274 IPR006626 -
Acco02g1139 493 SMART pbh1 387 408 IPR006626 -
Acco02g1139 493 SMART pbh1 278 304 IPR006626 -
Acco02g1139 493 SMART pbh1 358 379 IPR006626 -
Acco02g1139 493 SMART pbh1 305 326 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1139 Acco-ChrAcco02 8312110 8317670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1139 87 492 Glycoside Hydrolase AT3G57510 54.964 6.86e-156 448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g1132 06 7761149 7764087 Acco02g1139 02 8312110 8317670 CCT
Acco02g1139 02 8312110 8317670 Acco02g1139 02 8312110 8317670 ECH