Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1930 ATGGCGCGGCCAAGAAAGCCGCGATGCGGCATTGTTTTCTATATTCTGGCTTTCGTGTGCTTAGCACAGATACAGTGTCGTTTCCATGTGCTTGCCATGTTGGACCCTCTTGATTTCTTGGCTCTGCAATCGATTCGCAAGTCTCTCGAGGATATGCCCGGCTCGAATTTCTTTGCCTCTTGGGATTTCACTGCTGACCCCTGTAATTTCGACGGAGTTTACTGTGATTCCGACAAGGTTGCTGCCCTTAATCTCGGCGACCCCAGAGCTGGTTCTCCCGGTCTCACCGGTAGGCTCGACCCGGCGATCGGTAAGCTCTCTGCTCTTTCCGAGTTCACGGTTGTGCCTGGCAGGATCTACGGTTCCCTGCCTCAGTCTTTCTCTAATTTGAAGAACATCAGATTCCTTGGCGTTAGCCGGAACTTCATCTCCGGCGATATTCCAGAGCACTTGGGGAGGTTGCGCAATCTCAAAACCCTCGATCTCAGCTACAATCAGCTCACCGGACGCATTCCTTCATCCATCGGAGCCTTGCCTGAGCTAAACAACTTGATCCTCTGCCACAACCACCTCTCCGGTTCAGTGCCCTCGTTTGCGTCGCACACGCTTACTCGACTTGACCTGAAGCACAACGCTCTAACGGGCTCGCTCGCTCCCAATTCTCTCCCTCCCTCACTCCAATATCTCTCTCTGTCCTGGAATAATCTCAGTGGCCCAGTGGACCGGCTCTTAAACCAGATGAACCAGTTGAACTACTTGGACCTTAGCTTGAACCGGTTCACAGGCATCATTCCGCCACGCATATTCTCACTCCCACTCACCAATCTTCAACTGGAAAGGAACCAATTCACCGGCCCTGTCCAACCGGCTAATCAGGTCACAATCCCAACCGTCGATCTCAGCCACAACGAGTTTTCGGGTCAGATATCACCCATGTTTTCGACGGTGGAGAATCTATACCTCAACAACAACCGATTCTCGGGTCGGGTTCCGAGTAACTTCGTGGACCGGCTACTGGCCGCCAGAATACAGATACTGTATTTGCAACACAACTATCTGACCGACATTGAGATCAGTCCAACGGCTGAGATTCCTGTGAGCAGCTCGTTGTGTCTTCAATACAACTGTATGGTCCCGCCCGTACAGACGCCATGCCCCTTGAGGTCTGGGAAGCAGATAACGAGGCCTACGGCGCAATGCAACCAATGGAGAGGGCCCTGCATTGTATTGTGTAGTGGTGAATGGGCCTTTTTCTTGGATTGGAAGGACCCCTCCTTCTTTATAGTTGTCTCTGTGAGGGACACCCTAGCATATGATGACAATAATGATGATGATGGGACGTGA 1344 0.5186 MARPRKPRCGIVFYILAFVCLAQIQCRFHVLAMLDPLDFLALQSIRKSLEDMPGSNFFASWDFTADPCNFDGVYCDSDKVAALNLGDPRAGSPGLTGRLDPAIGKLSALSEFTVVPGRIYGSLPQSFSNLKNIRFLGVSRNFISGDIPEHLGRLRNLKTLDLSYNQLTGRIPSSIGALPELNNLILCHNHLSGSVPSFASHTLTRLDLKHNALTGSLAPNSLPPSLQYLSLSWNNLSGPVDRLLNQMNQLNYLDLSLNRFTGIIPPRIFSLPLTNLQLERNQFTGPVQPANQVTIPTVDLSHNEFSGQISPMFSTVENLYLNNNRFSGRVPSNFVDRLLAARIQILYLQHNYLTDIEISPTAEIPVSSSLCLQYNCMVPPVQTPCPLRSGKQITRPTAQCNQWRGPCIVLCSGEWAFFLDWKDPSFFIVVSVRDTLAYDDNNDDDGT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1930 447 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Acco02g1930 447 Pfam Leucine rich repeat 133 191 IPR001611 GO:0005515
Acco02g1930 447 Pfam Leucine Rich repeat 224 238 IPR001611 GO:0005515
Acco02g1930 447 Pfam Leucine Rich repeat 200 215 IPR001611 GO:0005515
Acco02g1930 447 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 17 405 - -
Acco02g1930 447 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Acco02g1930 447 Gene3D Ribonuclease Inhibitor 201 379 IPR032675 -
Acco02g1930 447 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Acco02g1930 447 FunFam Nuclear pore complex protein NUP107 37 197 - -
Acco02g1930 447 SUPERFAMILY L domain-like 47 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1930 Acco-ChrAcco02 15426737 15428542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1930 41 354 Receptor kinase-like Gene Family AT5G62230 32.515 9.41e-39 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1930 02 15426737 15428542 Acco06g0503 06 3112064 3113284 CCT
Acco02g1930 02 15426737 15428542 Acco02g1930 02 15426737 15428542 ECH