Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3858 ATGGCGACAAATTCTTCTAATGGAGAGCACCGAACGACAACGACGACAACACAGGCAACAAAGCCACCTCCCTTGCCTTCTCCCCTGCGCTTTTCCAAGTTCTTTCAGCCCAACATGAGAATTCTGGTTACTGGCGGAGCTGGATTCATTGGCTCTCACTTAGTTGACAGATTAATGCAGAATGAGAAAAATGAGGTTGTTGTTGCCGACAACTTCTTCACTGGATCCAAGGATAACCTCAGAAAATGGATCGGTCATCCTAGATTTGAGTTGATTCGTCATGATGTGACAGAGCAATTGTTCATTGAGGTTGATCAGATCTACCATCTTGCTTGTCCTGCTTCTCCGATTTTCTACAAATACAATCCCGTGAAGACTATAAAGACAAATGTGATAGGAACACTGAACATGCTTGGGCTGGCAAAAAGAGTGGGAGCAAGGATTTTGTTGACATCTACTTCAGAAGTATATGGGGATCCTCTTGTACATCCGCAACCAGAAAGTTATTGGGGCAATGTGAACCCTATTGGAGTTCGGAGTTGCTATGATGAGGGAAAGCGTGTGGCAGAAACATTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCCAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGAGTTGTGAGCAACTTTATTGCTCAAGCACTTCGTGGGGAGCCCCTGACTGTACAAGTTCCCGGAACGCAAACTCGTAGCTTCTGCTATGTCTCTGATATGGTTGATGGCCTTATCCGTCTAATGGAAGGAGAAAACACCGGTCCAATCAACCTTGGGAATCCAGGTGAATTTACGATGACTGAACTTGCTGAGACAGTGAAGGAGCTTATCAATCCAAGTGTGGAGATAAAGATGGTGGAGAACACTCCTGATGATCCTCGACAGAGAAAACCAGACATAACAAAGGCGAAGGAATTGTTAGGGTGGGAGCCAAAGGTCAAGCTGAGAGATGGTCTTCCTCTAATGGAAGAGGATTTCCGTCTCAGGCTTGGAGTTGCCAAAAAGAATTAA 1059 0.4476 MATNSSNGEHRTTTTTTQATKPPPLPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDRLMQNEKNEVVVADNFFTGSKDNLRKWIGHPRFELIRHDVTEQLFIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINLGNPGEFTMTELAETVKELINPSVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVAKKN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3858 352 CDD UGD_SDR_e 39 343 - -
Acco01g3858 352 Gene3D - 38 345 - -
Acco01g3858 352 MobiDBLite consensus disorder prediction 1 20 - -
Acco01g3858 352 FunFam UDP-glucuronic acid decarboxylase 6 38 347 - -
Acco01g3858 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 343 IPR036291 -
Acco01g3858 352 MobiDBLite consensus disorder prediction 1 27 - -
Acco01g3858 352 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 23 347 IPR044516 GO:0042732|GO:0048040|GO:0070403
Acco01g3858 352 Pfam GDP-mannose 4,6 dehydratase 42 336 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3858 Acco-ChrAcco01 54272261 54275277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3858 39 351 Miscellaneous Gene Families AT1G02000 24.713 6.10e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3858 01 54272261 54275277 Acco08g0185 08 1248931 1252860 CCT
Acco01g3858 01 54272261 54275277 Acco01g3858 01 54272261 54275277 ECH