Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3842 ATGGAGTTCGTCACTTTACTCTGTATTGTTCCGGTGTTGTATTTGTGCTTCGTGATATGGAAGGTGTTTGATGAGAGAAAAGATCAAGAGTGCTTTCTTTTAAATTACCAGTGCTATAAGCCACCTGATGATAGAAAGCTCGGCACTGAGTCTTGCGGCAAGATCATCGCCAGGAATCCTTACTTGGGCATTGGCGAGTACAAGTTCTTGCTCAAAGCCATTGTGAGCTCCGGCATCGGCGAGCACACTTACGCCCCAAGAAACTTCTTCTTGGGCCGCGAGACCCAGCCCACCTTGGAGGATGTCCGCTTGGAGCTTGACGAGTTCTTCCACGATTCCATCTCCAAGCTCCTGTCCAGATCACAACTCTCTCCCTCCGACATCGACGTTCTTGTCGTCAACGTGTCCATGTGCGCCGCCGTTCCCTCCCTGACGTCACGTATCATTAACCATTACAAAATGAGGGACAACATTAAGGCTTACAACCTCACCGGCATGGGCTGCAGCGCCAGCCTCGTTTCTCTGGACATCATCAACAACATCTTCAAGTCCCAGAAGAACAAGCTGGCTCTTCTGGTGACTTCGGAGTCTCTGAGTCCAAACTGGTATTCCGGAAAGGACAAATCGATGATTCTGACCAACTGTTTGTTCCGCACCGGTGGGTGTGCCATTCTTCTGACAAACAAGAGGAGTCTGAAACACAAAAGCATGTTGAGACTCAAGTGCCTAGTGAGAACTCATCACGGGGCTAGAGATGACTCATTTGGTTGCTGCTTGCAAAAGGAAGATGACGAAGGGCGACTTGGGTTCTACCTGGGGAAATCTCTCCCAAGAGCAGCTACAAGGGCTTTTGGGGATAATTTAAGAGTGATATCCCCAAAGATTTTACCGACGGGAGAGTTAATGAGGTTCATGGTGATGTCTCTCGTGAATAATCTCAGCAGAAAGAGCTGTGCAAAGACGTCATCAGGCGGAGGAATGGGAAAAACGCCGTTGAATTTGAAGGCAGGGGTTGATCATTTCTGTTTACATACAGGAGGGAAGGCAGTGATAGACGGCGTTGGGAAGAGTTTGGATCTGAATGAGTATGATGTGGAGCCGGCGAGGATGACACTGCACCGTTTTGGGAATACGTCAGCGAGCAGCCTGTGGTACGTGTTAGGGTACATGGAGGCGAAGAAGAGGCTGAAAAAAGGAGGGAGAATACTGATGATAAGCTTTGGGTCAGGCTTTAAATGCAATAGCTGTCTGTGGGAGGTCATGAGGGACGTTGACGACGCCAATGTCTGGGAAGACTGCATTGATGAGTACCCACCACAGTGCTTGGCCAACCCTTTCTTGGACAGGTATGGTTGGATCCACAAACTTGATGATCTCACCAACGTCCATGTACCCGATTTTCTTAGCTGA 1410 0.4908 MEFVTLLCIVPVLYLCFVIWKVFDERKDQECFLLNYQCYKPPDDRKLGTESCGKIIARNPYLGIGEYKFLLKAIVSSGIGEHTYAPRNFFLGRETQPTLEDVRLELDEFFHDSISKLLSRSQLSPSDIDVLVVNVSMCAAVPSLTSRIINHYKMRDNIKAYNLTGMGCSASLVSLDIINNIFKSQKNKLALLVTSESLSPNWYSGKDKSMILTNCLFRTGGCAILLTNKRSLKHKSMLRLKCLVRTHHGARDDSFGCCLQKEDDEGRLGFYLGKSLPRAATRAFGDNLRVISPKILPTGELMRFMVMSLVNNLSRKSCAKTSSGGGMGKTPLNLKAGVDHFCLHTGGKAVIDGVGKSLDLNEYDVEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGGRILMISFGSGFKCNSCLWEVMRDVDDANVWEDCIDEYPPQCLANPFLDRYGWIHKLDDLTNVHVPDFLS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3842 469 PANTHER 3-KETOACYL-COA SYNTHASE 11 439 IPR012392 GO:0006633|GO:0016020|GO:0016747
Acco01g3842 469 Gene3D - 80 420 IPR016039 GO:0016746
Acco01g3842 469 Pfam FAE1/Type III polyketide synthase-like protein 25 310 IPR013601 GO:0006633|GO:0016020|GO:0016747
Acco01g3842 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 450 IPR012392 GO:0006633|GO:0016020|GO:0016747
Acco01g3842 469 SUPERFAMILY Thiolase-like 106 421 IPR016039 GO:0016746
Acco01g3842 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 419 IPR013747 -
Acco01g3842 469 CDD CHS_like 30 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3842 Acco-ChrAcco01 54153397 54154806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3842 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 64.693 0.0 633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3842 01 54153397 54154806 Acco08g0209 08 1461974 1463395 CCT
Acco01g3842 01 54153397 54154806 Acco01g3842 01 54153397 54154806 ECH