Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3708 ATGGCGGCCGCTTTTCTCTTCACTGTTGCTCTGCTATTGGCGGCAACCGTGGCCCTCGGATTTCCGCCGTCTCTGACTCTGGAGAGGGCTTTTCCGTCCAATCATGGAGTGGAGTTGAGTCAGCTGAGAGCTCGGGACGGCCTCAGGCATCGGAGAATGTTGCAGTCTTCAAACGGCGTCGTGGATTTCCCAGTTTCAGGAACCTTCGATCCCTTCCAAGTCGGGCTTTACTATACAAAAGTTCAGTTAGGCTCACCTCCAACAGAATACTACGTACAGATTGACACTGGCAGTGATGTCCTCTGGGTTGGCTGCCGATCCTGCAATGGCTGTCCCCAGACAAGTGGACTCCAAATTCAACTCAATTTTTTTGATCCTGGGAGTTCATCAACGGCTTCAGCGATATCTTGTTCTGACCAAAGATGCAAAGCCGGAGTTCAATCATCAGATGCTAGCTGTTCCAGCCAGAACAACCAGTGTGCTTACACATTCCAATACGGGGATGGAAGCGGGACGTCAGGCTATTATGTGTCTGACTTGATGCATTTTAATACAATTTTTGAAGGATCTGTGACTTCAAATTCTTCAGCCCCTGTAGTTTTCGGGTGTAGCATCCAGCAGACTGGTGACTTGACAAAGTCTGATAGAGCTGTTGATGGGATATTCGGGTTTGGGCAACAGGGGATGTCTGTAATTTCCCAGCTTGCCTCACAAGGCGTGGCGCCAAGAGTGTTCTCTCACTGCTTGAAAGGAGATAACACTGGTGGGGGCATTTTGGTTCTTGGTGAGATTGTGGAACCAAATATAGTTTATACTCCACTTGTTCCATCGCAGCCTCATTACAATTTAAATCTGCAGAGCATCTCAGTAAATGGCCAAATGTTATCAATTGATTCGTCTGTTTTTGCGACTTCAAGCAACCGAGGTACCATTATCGACTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTATGACCCCTTTGTCAGTGCGGTTACATCTACAGTTCCGCAATCCATACGAACTGTTCTTTCCAAGGGGAACCAATGTTACCTAGTCACCACCAGCATCTCTGATATTTTTCCTCTAGTAAGCCTGAACTTTGCCGGTGGCGCGTCTATGGTTTTAAGACCACAGGACTACCTCATACAGCAGACTTCAATTGGTGGCGCAGCAATGTGGTGTATTGGCTTTCAAAAAATTCAGGGTCAAGCGATAACAATATTAGGAGATCTTGTATTGAAAGACAGAATTTTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCCAACTATGATTGTTCAATGTCGGTTAATGTCTCAGCATCAACCGGCACAGGCAGAAGTGAATATGTGAATGCAGGAGAGCTGAGTGGAAGCAGTTCTATACGTGAAGGGATAAAGGCGGGAATCTTGGCTTTCTTGGTGCACTTAACTCTGATAAGCTGTATTGTATTTTTGTAG 1470 0.4646 MAAAFLFTVALLLAATVALGFPPSLTLERAFPSNHGVELSQLRARDGLRHRRMLQSSNGVVDFPVSGTFDPFQVGLYYTKVQLGSPPTEYYVQIDTGSDVLWVGCRSCNGCPQTSGLQIQLNFFDPGSSSTASAISCSDQRCKAGVQSSDASCSSQNNQCAYTFQYGDGSGTSGYYVSDLMHFNTIFEGSVTSNSSAPVVFGCSIQQTGDLTKSDRAVDGIFGFGQQGMSVISQLASQGVAPRVFSHCLKGDNTGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQMLSIDSSVFATSSNRGTIIDSGTTLAYLAEEAYDPFVSAVTSTVPQSIRTVLSKGNQCYLVTTSISDIFPLVSLNFAGGASMVLRPQDYLIQQTSIGGAAMWCIGFQKIQGQAITILGDLVLKDRIFVYDLAGQRIGWANYDCSMSVNVSASTGTGRSEYVNAGELSGSSSIREGIKAGILAFLVHLTLISCIVFL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3708 489 Gene3D Acid Proteases 52 263 IPR021109 -
Acco01g3708 489 PANTHER ASPARTYL PROTEASES 21 430 IPR001461 GO:0004190|GO:0006508
Acco01g3708 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Acco01g3708 489 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Acco01g3708 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Acco01g3708 489 Gene3D Acid Proteases 264 443 IPR021109 -
Acco01g3708 489 CDD pepsin_A_like_plant 77 436 IPR034161 -
Acco01g3708 489 FunFam Aspartic proteinase-like protein 2 60 263 - -
Acco01g3708 489 FunFam Aspartic proteinase-like protein 2 264 443 - -
Acco01g3708 489 SUPERFAMILY Acid proteases 72 440 IPR021109 -
Acco01g3708 489 ProSiteProfiles Peptidase family A1 domain profile. 77 432 IPR033121 -
Acco01g3708 489 Pfam Xylanase inhibitor C-terminal 280 432 IPR032799 -
Acco01g3708 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3708 Acco-ChrAcco01 53274935 53278971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3708 51 437 Miscellaneous Gene Families AT1G44130 26.866 2.84e-41 150
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3708 01 53274935 53278971 Acco08g0370 08 2890599 2895424 CCT
Acco01g3708 01 53274935 53278971 Acco01g3708 01 53274935 53278971 ECH