Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0953 . . . . . Adu03g03258 Aed10g2036 . . . . . . . . . . . . . . . . . . . . . Car06g01432 . Cca09g01405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g3983 Mal7g3759 . . . . . . . Mtr4g3131 . . Phac2g03256 . . . . . . . . . . . . . . . Pvu2g2210 . . . . . . . . . . Tpr3g1711 . . . Tsu02g01679 . . . . . . . . . . . Vra7g1552 .
Vvi3g0954 . . . . . . . . . . . . . . . . . . Apr3g1945 . . . . . . . . . Car06g01431 . Cca09g01406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g3984 . . . . . . . . Mtr4g3132 . . . . . . . Psa7g2368 . . . . . . . . . . . . . . . . . . . . . Tpr3g1706 . . . Tsu02g01675 . . . . . . . . . . . Vra7g1551 .
Vvi3g0955 . . . . . . . . . . . . . . . . . . Apr3g1946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g3761 . . . . . . . Mtr4g3133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g1704 . . . Tsu02g01674 . . . . . . . . . . . . .
Vvi3g0956 . . . . . . . . . . . . . . . . . . Apr3g1947 . . . . . . . . . Car06g01429 . . . . . . . . . . . . . . . . . . . Lal15g0552 . . . . . Lan18g0620 . . . . . . . . . . . . . . . . . . Lja4g3986 Mal7g3762 . . . . . . . Mtr4g3135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto13g2561 Tpr3g1703 . . . Tsu02g01672 . . . . . . . . . . . . .
Vvi3g0957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0958 . . . . Adu10g00470 . . . . . Ahy20g0671 . Aip10g00679 . . . . . . . . . . . . . . . . . . . . . Dod03g0246 . . . Glsi11g2580 . . . . . . . . . . . . . . Lal11g0102 . . . . . . Lapu6g01120 . . . . . . Lele16g1897 . . . . . . . . . . . . . . . . . . . . Prci3g0771 . . . . . Pte19g00838 Pte2g00727 . . Pumo2g01006 . Pvu6g2076 . Rops11g00344 . . . Spst6g00618 . . . . Sto13g2566 . . . . . . Vian6g01918 . Vifa1g10692 . Vimu2g00479 . . . Vivi1g08532 . . .
Vvi3g0959 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 376 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0953 Chr3 9776628 9777158 -
Adu Adu03g03258 Chr03 118933484 118935422 -
Aed Aed10g2036 Chr10 24287505 24289482 +
Car Car06g01432 Chr06 13919233 13921239 -
Cca Cca09g01405 Chr09 37345772 37347841 +
Lja Lja4g3983 Chr4 72921656 72924644 -
Mal Mal7g3759 Chr7 103257611 103259593 +
Mtr Mtr4g3131 Chr4 44858890 44861590 +
Phac Phac2g03256 Chr2 34107466 34109808 -
Pvu Pvu2g2210 Chr2 37698660 37699422 -
Tpr Tpr3g1711 Chr3 15193207 15196002 -
Tsu Tsu02g01679 Chr02 14795854 14797930 +
Vra Vra7g1552 Chr7 33559135 33561018 -
Vvi Vvi3g0954 Chr3 9826460 9827998 -
Apr Apr3g1945 Chr3 35495792 35497850 +
Car Car06g01431 Chr06 13916723 13918640 -
Cca Cca09g01406 Chr09 37351223 37353578 +
Lja Lja4g3984 Chr4 72924325 72926268 +
Mtr Mtr4g3132 Chr4 44862270 44864538 -
Psa Psa7g2368 Chr7 169065238 169068907 -
Tpr Tpr3g1706 Chr3 15175358 15177571 +
Tsu Tsu02g01675 Chr02 14787765 14789897 +
Vra Vra7g1551 Chr7 33485023 33487637 -
Vvi Vvi3g0955 Chr3 9859134 9861149 -
Apr Apr3g1946 Chr3 35501213 35503192 +
Mal Mal7g3761 Chr7 103262102 103264174 -
Mtr Mtr4g3133 Chr4 44869214 44871511 +
Tpr Tpr3g1704 Chr3 15162867 15167116 -
Tsu Tsu02g01674 Chr02 14777351 14779339 +
Vvi Vvi3g0956 Chr3 9890581 9892416 -
Apr Apr3g1947 Chr3 35509179 35515720 +
Car Car06g01429 Chr06 13906209 13908455 -
Lal Lal15g0552 Chr15 3838394 3840379 -
Lan Lan18g0620 Chr18 11296022 11297148 +
Lja Lja4g3986 Chr4 72935631 72938048 +
Mal Mal7g3762 Chr7 103275660 103277714 +
Mtr Mtr4g3135 Chr4 44879320 44881901 +
Sto Sto13g2561 Chr13 31722455 31736286 -
Tpr Tpr3g1703 Chr3 15152291 15154243 +
Tsu Tsu02g01672 Chr02 14769620 14771653 -
Vvi Vvi3g0957 Chr3 9892982 9893161 +
Vvi Vvi3g0958 Chr3 9989553 10006095 +
Adu Adu10g00470 Chr10 5454725 5463992 -
Ahy Ahy20g0671 Chr20 7343894 7355000 -
Aip Aip10g00679 Chr10 7102830 7112539 -
Dod Dod03g0246 Chr03 2525871 2532291 +
Glsi Glsi11g2580 Chr11 18496507 18521518 -
Lal Lal11g0102 Chr11 676760 692269 +
Lapu Lapu6g01120 Chr6 11148950 11164301 +
Lele Lele16g1897 Chr16 11420719 11433316 -
Prci Prci3g0771 Chr3 9818986 9834360 +
Pte Pte19g00838 Chr19 6959464 6963431 +
Pte Pte2g00727 Chr2 5926032 5932332 +
Pumo Pumo2g01006 Chr2 15132301 15154117 -
Pvu Pvu6g2076 Chr6 30509865 30511901 -
Rops Rops11g00344 Chr11 4688988 4691509 +
Spst Spst6g00618 Chr6 5577075 5584143 +
Sto Sto13g2566 Chr13 31785763 31791675 +
Vian Vian6g01918 Chr6 36432511 36445760 -
Vifa Vifa1g10692 Chr1 1797279020 1797294836 -
Vimu Vimu2g00479 Chr2 2732352 2739759 +
Vivi Vivi1g08532 Chr1 244280456 244307493 +
Vvi Vvi3g0959 Chr3 10018156 10020069 -
Vvi Vvi3g0960 Chr3 10030090 10030719 +
Vvi Vvi3g0961 Chr3 10091914 10092024 +
Vvi Vvi3g0962 Chr3 10119674 10120403 +