Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0150 ATGGGTGTTATCACTTATGAGCATGAGATCACTTCTTCAATCCCTCCGGCCAAGATGTTCAAGGCCTTTATCCTTGACTCTGATAAACTTATACCCAAGATCCTTCCACAAGCAATTAAGTCCACTGAGATCATTGAAGGAGACGGAGGGCCTGGATCAATCAAAAAGATTACTTTTAGAGAAGGGAGCCAATTCAATTATGTAAAGCACAGGGTTGATGGAATAGACAAAGAGAACTTCACATACACTTACAGTGTGATTGAGGGTGATGCTTTGATGGGCACCCTTGAATCAATTTCTTATGAGGTCAAGTTGGTGGCCTTCTCCTGA 330 0.4212 MGVITYEHEITSSIPPAKMFKAFILDSDKLIPKILPQAIKSTEIIEGDGGPGSIKKITFREGSQFNYVKHRVDGIDKENFTYTYSVIEGDALMGTLESISYEVKLVAFS* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0150 109 Gene3D - 2 109 IPR023393 -
Vvi5g0150 109 SUPERFAMILY Bet v1-like 2 107 - -
Vvi5g0150 109 PANTHER - 1 106 - -
Vvi5g0150 109 Pfam Pathogenesis-related protein Bet v 1 family 1 99 IPR000916 GO:0006952
Vvi5g0150 109 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0150 109 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0150 109 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0150 109 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0150 109 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0150 109 CDD Bet_v1-like 5 107 - -
Vvi5g0150 109 FunFam Major pollen allergen Bet v 1-A 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0150 Vvi-Chr5 1288628 1289093 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0150 - - vvi:100243040 197.978