Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0149 ATGGGTGTTATCACTTATGAGAATGAGATCACTTCTTCAATCCCCCCAGCCAAGATGTTCAAGGCCTTTGTCCTTGATGTCGACAAGCTCATCCCTAAGATCCTGCCACAAACCATTAAGTGTGTTGAGATCATTGAAGGAGATGGAGGGGCTGGAATCATCAAGAAGGTTACTTTTGGTGAAGGTTGCTATTATAATAAGAAGATGTCAATTATACATCCAGGAACCCCAGGGACAACTTTCAACAAGGTTTTTTACTAA 261 0.4138 MGVITYENEITSSIPPAKMFKAFVLDVDKLIPKILPQTIKCVEIIEGDGGAGIIKKVTFGEGCYYNKKMSIIHPGTPGTTFNKVFY* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0149 86 Gene3D - 1 74 IPR023393 -
Vvi5g0149 86 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0149 86 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0149 86 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0149 86 FunFam Major pollen allergen Bet v 1-A 1 73 - -
Vvi5g0149 86 SUPERFAMILY Bet v1-like 2 65 - -
Vvi5g0149 86 Pfam Pathogenesis-related protein Bet v 1 family 1 61 IPR000916 GO:0006952
Vvi5g0149 86 PANTHER - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0149 Vvi-Chr5 1282363 1288085 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0149 - - vvi:100248161 109.383