Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0148 ATGCCACCCTCTAGTTCTCACATATCCTCACCTCAAAACACTCCCTACAAACCCAGCAAGCATCCTCCTCCTCCTCCTTCGATCATTTTCAAATTAGGCTCTAGCATCATGGGTGTTATTACTTATGAGATGGAGGTCACTTCTTCAATACCCCCAGCCAAGATGTTCAAAGCCTCTGTGCTTGATGCCGACAACCTCATTCCCAAGATCCTTCCCCAAGCTATCAAGAATGTTGAGATCATCCAAGGAGATGGAGGGCCTGGAACCATCAAGAAGATCTACTTTGGTGAAGGCAGCCAATTCAAGAGCGTGACACATCGTGTTGATGGGATTGACAAAGAGAACTTCACTTACAGTTACAGTATTATCGAAGGTGATGCTTTAATGGGCATCCTAGAATCAATCTCTTATGAGGTCAAGTTGGTGGCATCTCCTGATGGAGGATCCATCTGCAAGAACATTAGTAAGTACCACACAAAAGATGATGCAGTGATCGATGAAGAGCAAATTAAAGCTGGCAAAGAAAAGGCTTCTGGGATGTTCAAGGCTATTGAGGCTTACCTCTTGGCAAATCCTGATGCTTATTAA 588 0.4422 MPPSSSHISSPQNTPYKPSKHPPPPPSIIFKLGSSIMGVITYEMEVTSSIPPAKMFKASVLDADNLIPKILPQAIKNVEIIQGDGGPGTIKKIYFGEGSQFKSVTHRVDGIDKENFTYSYSIIEGDALMGILESISYEVKLVASPDGGSICKNISKYHTKDDAVIDEEQIKAGKEKASGMFKAIEAYLLANPDAY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0148 195 Gene3D - 38 194 IPR023393 -
Vvi5g0148 195 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 125 157 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 SMART Bet_v_1_2 35 191 IPR000916 GO:0006952
Vvi5g0148 195 PANTHER - 37 195 - -
Vvi5g0148 195 CDD Bet_v1-like 41 188 - -
Vvi5g0148 195 FunFam Major pollen allergen Bet v 1-A 37 195 - -
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 121 134 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 146 162 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 62 72 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 102 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 39 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 86 95 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 PRINTS Major pollen allergen Bet V1 signature 180 190 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0148 195 MobiDBLite consensus disorder prediction 1 24 - -
Vvi5g0148 195 Pfam Pathogenesis-related protein Bet v 1 family 37 191 IPR000916 GO:0006952
Vvi5g0148 195 SUPERFAMILY Bet v1-like 38 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0148 Vvi-Chr5 1271452 1272235 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0148 - - vvi:100260133 315.849