Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0147 ATGGGTGTTATCACTTATGAAATGGAGATCACTTCTCCAATCCCCCCAGCCAAGATGTTCAAGGCCTTTGTCCTTGACTCCGACAACCTCATCCCGAAGATCTGCCTCAGGCTATCAAGCGTGTTGAAACCATTGAAGGAGGTGGAGGGTAGTCAATTCAACTACATAAAGCACCGGATAGATGGGATCAACAAAGAGAACTTCACTTACAGTTACAGTGTGATCGAAGGTGATGCTTTGATGGGCACCCTTGAATCATTCTCTTATGAGGTCAAGTTGGTGGAGGATCCATCTGCAAGAACACCAGTAAATACCACACCAAAGGGGACATTGAGATCACAGAAGACCAGATCAAGGCTGCCAAAGAGAAGGCCATGGGCATGTACAAGGCTGTTGAAGCCTACCTCTTGGCAAATCCTGATGCCTATTAAACAGAGTGGTCCATATTCAATATAG 456 0.4583 MGVITYEMEITSPIPPAKMFKAFVLDSDNLIPKICLRLSSVLKPLKEVEGSQFNYIKHRIDGINKENFTYSYSVIEGDALMGTLESFSYEVKLVEDPSARTPVNTTPKGTLRSQKTRSRLPKRRPWACTRLLKPTSWQILMPIKQSGPYSI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0147 151 Pfam Pathogenesis-related protein Bet v 1 family 1 94 IPR000916 GO:0006952
Vvi5g0147 151 Gene3D - 2 117 IPR023393 -
Vvi5g0147 151 PANTHER - 1 99 - -
Vvi5g0147 151 MobiDBLite consensus disorder prediction 99 114 - -
Vvi5g0147 151 MobiDBLite consensus disorder prediction 99 119 - -
Vvi5g0147 151 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0147 151 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0147 151 FunFam Major pollen allergen Bet v 1-A 1 113 - -
Vvi5g0147 151 CDD Bet_v1-like 5 97 - -
Vvi5g0147 151 SUPERFAMILY Bet v1-like 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0147 Vvi-Chr5 1268820 1269511 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0147 - - vvi:100243040 142.124