Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0146 ATGGGTGTTTTCACTTACGAGCAGGAGATCACTTCTTCAGTTCCCCCGGCCAAGATGTTCAAGGCCGCTGTCCTTGATGCTGACAACCTCATTCCCAAGGTCAGGCCTCAAGCTATCAAGTGCGTGGAAGTCATTCAAGGAGACGGAGGCCCTGGAACCATCAAGAAGATTCACTTTGGTGAAGGCCACAAATTCAAAAGCATGACACACCGGGTTGATGCGATTGACAAAGAGAAATTCTCATTCTGCTACACTGTGATCGACGGGGATGTTTTGACTGACGGCGTTGAATCAATTTGTCATGAGCTCACAGTGGTGCCTGCTCCAGGTGGAGGATCCATCTACAAGAACACCAGCAAGTACCACACCAAGGGCGCTGAGGTCTGTGAAGAGCACGTTAAGGGTGGCAAAGAGGATGCTCTCGCAACGTTCAAGGCTATTGAAGCCTACGTCCTGGCCCATCCTGATGCCTATTAA 477 0.5031 MGVFTYEQEITSSVPPAKMFKAAVLDADNLIPKVRPQAIKCVEVIQGDGGPGTIKKIHFGEGHKFKSMTHRVDAIDKEKFSFCYTVIDGDVLTDGVESICHELTVVPAPGGGSIYKNTSKYHTKGAEVCEEHVKGGKEDALATFKAIEAYVLAHPDAY* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0146 158 SUPERFAMILY Bet v1-like 2 158 - -
Vvi5g0146 158 Gene3D - 1 158 IPR023393 -
Vvi5g0146 158 PANTHER - 1 158 - -
Vvi5g0146 158 FunFam Major pollen allergen Bet v 1-A 1 158 - -
Vvi5g0146 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vvi5g0146 158 CDD Bet_v1-like 4 151 - -
Vvi5g0146 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0146 158 SMART Bet_v_1_2 5 154 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0146 Vvi-Chr5 1263801 1264384 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0146 - - vvi:100249884 326.635