Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0145 ATGGGTGTTTTCACTTACGAGAGTGAGGTCACTTCCTCGGTTCCCCCAGCCAAGATGTTCAAGGCCTCTATCCTCGATTCTGACAACCTCATTCCCAAGATAAGGCCTCAAGATATCAAGAGTGTGGAAATCCTACAAGGACAGGGAGGTCCCGGAACCATCAAGAAGATTCACTTTGGTGAAGGCAGAAAATTCAAAAGCATGACACACAGGATTGATGCGATTGACAAAGAGAACTTCTCATTCAGCTACACTGTGATTGATGGAGATGTTTTGACGAGCGGCATTGAATCAATTTCTCATGAGCTCAAAGTGGTGGCTTCTCCTGATGGAGGATGCATCTACAAGAACACCAAAAAGTACCACACCAAGGCCGGTGTAGAGATCAGTGAAGAGCACGTTAAGGGCGGCAAAGAGGAGTCTCTCGCAGTGTTCAAGCCTACATCTTGGCACACCCTGATGCCTATTAAGAGGATTTGTAACTCAAGGATTGAAGATATCATGGGTGTTTTCACTTACGAGAGTGAGGTCACTTCCTCAATTCCCCCAGCTAAGATGTTCAAGGCCGCTATCCTCGATTCTGACAACCTCATTCCCAAGGTAAGGCCTCAAGCTATCAAGAGTGTGGAAATCATACAAGGAGAGGGAGGCCCTGGAACCATCAAGAAGATTCACTTTGGTGAAGGCAGCAAATTCAAAAGCATGACACACCGGGTTGATGCGATTGACAAAGAGAACTTCACATTCAGCTACACTGTGGTTGACGGAGATGTTTTGACAGGCGGCATTGAATCAATTTCTCATGAGCTCAAAGTGGTGGCTTCTCCTGATGGAGGATCCATCTACAAGAACACCAGCAAGTACCACACCAAGGGCGATGTAGAGATCAGTGAAGAGCACATTAAGGGTGGCAAAGAAGAGGCTCTGGCATTGTTCAAGGCTATTGAAGCCTACGTCCTGGCACATCCCGATGCCTATTAA 981 0.4679 MGVFTYESEVTSSVPPAKMFKASILDSDNLIPKIRPQDIKSVEILQGQGGPGTIKKIHFGEGRKFKSMTHRIDAIDKENFSFSYTVIDGDVLTSGIESISHELKVVASPDGGCIYKNTKKYHTKAGVEISEEHVKGGKEESLAVFKPTSWHTLMPIKRICNSRIEDIMGVFTYESEVTSSIPPAKMFKAAILDSDNLIPKVRPQAIKSVEIIQGEGGPGTIKKIHFGEGSKFKSMTHRVDAIDKENFTFSYTVVDGDVLTGGIESISHELKVVASPDGGSIYKNTSKYHTKGDVEISEEHIKGGKEEALALFKAIEAYVLAHPDAY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0145 326 PANTHER - 168 326 - -
Vvi5g0145 326 FunFam Major pollen allergen Bet v 1-A 168 326 - -
Vvi5g0145 326 FunFam Major pollen allergen Bet v 1-A 1 154 - -
Vvi5g0145 326 Gene3D - 169 325 IPR023393 -
Vvi5g0145 326 Gene3D - 2 154 IPR023393 -
Vvi5g0145 326 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 256 288 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 SMART Bet_v_1_2 168 322 IPR000916 GO:0006952
Vvi5g0145 326 Pfam Pathogenesis-related protein Bet v 1 family 1 125 IPR000916 GO:0006952
Vvi5g0145 326 Pfam Pathogenesis-related protein Bet v 1 family 168 322 IPR000916 GO:0006952
Vvi5g0145 326 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 CDD Bet_v1-like 171 319 - -
Vvi5g0145 326 SUPERFAMILY Bet v1-like 169 326 - -
Vvi5g0145 326 SUPERFAMILY Bet v1-like 2 146 - -
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 252 265 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 233 252 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 311 321 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 170 190 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 217 226 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 277 293 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 PRINTS Major pollen allergen Bet V1 signature 193 203 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0145 326 CDD Bet_v1-like 4 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0145 Vvi-Chr5 1251186 1260753 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0145 - - rcu:8278794 320.857