Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0144 ATGGGTGTTTTCACTTACGAGAGTGAGGTCACTTCCTCGGTTCCCCCAGCCAAGATGTTCAAGGCCGCTATCCTCGATTCTGACAACCTCATTCCCAAGATAAGGCCTCAAGATATCAAGAGTGTGGAAATCCTACAAGGACAGGGAGGTCCCGGAACCATCAAGAAGATTCACTTTGGTGAAGGCAGAAAATTCAAAAGCATGACACACAGGGTTGATGCGATTGACAAAGAGAACTTCTCATTCAGCTACACTGTGATTGACGGAGATGTTTTGACGAGCGGCATTGAATCACTTTCTCATGAGGTCAAAGTGGTGGCTTCTCCTGATGGAGGATGCATCTTCAAGAACACCAAAAAGTACCACACCAAGGCCGGTGTAGAGATCAGTGAAGAGCACGTTAAGGGCGGCAAAGAGGAGTCTCTCGCATTGTTCAAGGCTATTGAAGCCTACCTCTTGGCACACCCTGATGCCTATTAA 480 0.475 MGVFTYESEVTSSVPPAKMFKAAILDSDNLIPKIRPQDIKSVEILQGQGGPGTIKKIHFGEGRKFKSMTHRVDAIDKENFSFSYTVIDGDVLTSGIESLSHEVKVVASPDGGCIFKNTKKYHTKAGVEISEEHVKGGKEESLALFKAIEAYLLAHPDAY* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0144 159 SUPERFAMILY Bet v1-like 2 159 - -
Vvi5g0144 159 Gene3D - 2 159 IPR023393 -
Vvi5g0144 159 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Vvi5g0144 159 SMART Bet_v_1_2 1 155 IPR000916 GO:0006952
Vvi5g0144 159 PANTHER - 1 159 - -
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0144 159 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Vvi5g0144 159 CDD Bet_v1-like 4 152 - -
Vvi5g0144 159 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0144 Vvi-Chr5 1246986 1247594 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0144 - - vvi:100261887 318.931