Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0140 ATGGGTGTCACAACTTTTACTCAAGAGTTTGTAACTCCGGTCTCTCCTGCTCGGATGTTCAAGGCGCTGGTCGTGGATTCCCATATCCTTGTCCCCAGGTTGGTGCCTGAATCAGTAAAGAGCATCGAGTTTGTTGAAGGTGATGGTGGGGCTGGAAGCATTACACAGACGAACTTCTCTGGTGATAGTGATTGCGAGTATTTGAAGTATAAGATCAATGCAGTGGACAAAGAGAAGCTAGAGTGCAGATACACTTTGATTGAAGGTGGTGTGCTTGGTGATCAGCTTGAATCGATTGTTTATGAGATGAAATTCGAGGAGTCTGGTGATGGAGGATGCATTTGCAAGACGAGGAGTGAGTATCACACTAAGGGGGAGTTTGAGATTAAGGAGGAGAGTATCAGAGAAGGGAAGGAAAAAGCCATGGGAGTGTATAAGCTGGTTGAGGCCTACCTTCTTGCTAACCCTGACGAGGAGTTGTGA 483 0.4638 MGVTTFTQEFVTPVSPARMFKALVVDSHILVPRLVPESVKSIEFVEGDGGAGSITQTNFSGDSDCEYLKYKINAVDKEKLECRYTLIEGGVLGDQLESIVYEMKFEESGDGGCICKTRSEYHTKGEFEIKEESIREGKEKAMGVYKLVEAYLLANPDEEL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0140 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Vvi5g0140 160 CDD Bet_v1-like 5 152 - -
Vvi5g0140 160 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Vvi5g0140 160 SUPERFAMILY Bet v1-like 2 157 - -
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vvi5g0140 160 Gene3D - 2 158 IPR023393 -
Vvi5g0140 160 PANTHER - 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0140 Vvi-Chr5 1228426 1229010 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0140 - - vvi:100263738 322.783