Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0123 ATGAAGCCACTGGAGAGACCATTCAACGTTAACTCGATCACTCGGAGGGTTGATGTCGATGATCGGATTCCTCTCCGTTATTACTATAGGATCGCGGATAATCTAATCAAACAGGCGAGTGTTTATCGAGAGGAGAAGAATCTTATAGACTTGTATATCATACTTCTTAGGTTTTCGAGTTTGTTGTCCGAGACTATACCATTTCATCGAGACTACCAGGTTTTGCTTCCAAAAGAAAGAGCAATTTATAGGAAGAAATTGTTAGCTGTGCTAGATGAGCTAGAATCTTTGAAGCCTGAATTTCAACGTCAAGTGAATGAACTGAACAAAGCTCACACAGTATCTCAACAGCAGCAAATTGATGTCTTGGAAAGGACTCCATATGATTCAGAGATATCTTCACAATGGCCCCCTGTAAATAAGAAACCTTTCCCCAGCTTTGATAATAAGCAGGCAGTCAGCCGAGCACCTCAGATTTCATGGAAATATAAAAATGATCATACTCAAGTTTTATCATCAAATCCCATGCAGGTTGACAAGCAGTTTCAGAAGTTGTCTCTGAGTCTACCTCTTCCTAAGAAAGAGACTTTATCCAGACACTCATTTTTAGGCCCCAATGGTCTTAGGGGTCAGTGGCTGGGCCCTAGTGCGGAGATAAAGATTCAGTATCCAAGTAATACCGACTTAACTTCTACTGAAAATTTAGGCACTAGTCAGGATGAACAATATGATCTTGCAACAATAAAAGATAGTGATCTGGGAGGCGATAGATCTCCTATGGAGTCAGTGCTTTCCTTGGATGATGGTAGATGGTTATGCCCTTCTGAGGAGTCACCTCAGTTTACTATTGAAGAGAGGGATGATAATTTCCCCTTGGGCAACATCAGGCAGCCTTCTCCTCCTCCTGTTCTTGCTCAAATCCAGCAGGACTGCCATCCAATTCCGCCATCAAAAGTTGCAGATCCACGACCTGGACCTGCAACTTCTCAGCATGGGATGCCTAGTTCTAATTCTTATCAACATTTGCACATTCCAGTTAGTATGATGGAAGATTTCTTAAGATTAGCACTGGCAAATACAAAAAAAAATTTAGAAACTTGTGGTGTTCTTGCTGGCTCACTGAAAAACAGAGTTTTCCATATCACGACGCTTATAATCCCAAAGCAGGAATCAACTTCAGATTCTTGTCAAACGTTGAATGAAGAAGAAATATTTGAGGTCCAGGACAAATTGTCCCTTTTTCCTCTTGGATGGATTCATACGCACCCATCACAGACCTGTTTCATGTCATCAGTTGATCTGCACACACATTATTCATATCAGATCATGCTACCAGAAGCAATTGCAATTGTTATGGCCCCCACGGATACATCCAGTCCACATGGCATATTTCATCTATCCGATCCAGCTGGTGTGTCTGTGATTCGAAATTGTCAACAGCGTGGGTTTCATCCTCATGAGGAGTGTCCAGATGGAAGCCCAATTTATGAACACTGTTCACATGTCTACATGAACCCCAAATTGAAGTTTGATGTGGTTGATCTTCGCTAG 1551 0.4178 MKPLERPFNVNSITRRVDVDDRIPLRYYYRIADNLIKQASVYREEKNLIDLYIILLRFSSLLSETIPFHRDYQVLLPKERAIYRKKLLAVLDELESLKPEFQRQVNELNKAHTVSQQQQIDVLERTPYDSEISSQWPPVNKKPFPSFDNKQAVSRAPQISWKYKNDHTQVLSSNPMQVDKQFQKLSLSLPLPKKETLSRHSFLGPNGLRGQWLGPSAEIKIQYPSNTDLTSTENLGTSQDEQYDLATIKDSDLGGDRSPMESVLSLDDGRWLCPSEESPQFTIEERDDNFPLGNIRQPSPPPVLAQIQQDCHPIPPSKVADPRPGPATSQHGMPSSNSYQHLHIPVSMMEDFLRLALANTKKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEEEIFEVQDKLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTSSPHGIFHLSDPAGVSVIRNCQQRGFHPHEECPDGSPIYEHCSHVYMNPKLKFDVVDLR* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0123 516 ProSiteProfiles MPN domain profile. 342 472 IPR037518 -
Vvi5g0123 516 FunFam AMSH-like ubiquitin thioesterase 3 5 120 - -
Vvi5g0123 516 Gene3D - 1 129 - -
Vvi5g0123 516 PANTHER AMSH-LIKE PROTEASE 2 516 - -
Vvi5g0123 516 CDD MPN_AMSH_like 339 516 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vvi5g0123 516 MobiDBLite consensus disorder prediction 312 336 - -
Vvi5g0123 516 SMART pad1_6 341 469 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi5g0123 516 Pfam USP8 dimerisation domain 13 102 IPR015063 -
Vvi5g0123 516 Coils Coil 91 111 - -
Vvi5g0123 516 FunFam AMSH-like ubiquitin thioesterase 3 327 516 - -
Vvi5g0123 516 Gene3D Cytidine Deaminase, domain 2 326 516 - -
Vvi5g0123 516 SUPERFAMILY JAB1/MPN domain 341 471 - -
Vvi5g0123 516 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 338 445 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0123 Vvi-Chr5 1088280 1098923 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0123 K11866 - vvi:100243131 1039.25