Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0122 ATGGCGTCTCTCAAGAACCTCTTCTCCACTCCCCTACACGCTCCAAGAACCCTTTCCTTCCCTATTTCACCCCCCAGAACCCACTTCTTTGTAGGGTCACTTCGCATTCTTTCTTTCTTCTTCTTCTTCTCAGCAACCTTCGCCGATACCTCGCCGGTCGTGGCCGCTGAAACTCTCGTTTCTCGTCTTCTCCCCACCTCAAACCGCGCCTCGCCCACCACTTTCTGCGCTCATCTCGTGTCCAACTCACATGGGACTCGCACTGAGGGCGCTTCACTCTCAGCAGTCAAAGAAACCCGGAAGAGTCCAAGAAACAGCGAGTCTGATGCAGTGGGTGACCTCAGTTCTTGTGACATCTTTGATGGTAACTGGGTTTTGGATGATTCTGAGCCGGTTTACCCACCTGGGTCTTGTCCGTACATCGACGACGCCTTCAACTGCTTCAAGAACGGCCGGCCGGATTCCGATTATCTCCGTTTCCGGTGGAAGCCACAGGGGTGCCAGATCCCAAGGTTTGATGGGAGGAAAATGTTGAAGATGTTGAGAGGGAAAAGGCTGATGTTCGTCGGCGACTCCTTGAATCGGAACATGTGGGAATCGCTGGTCTGTGCTTTGAGAGAGTCATTGGTGGATAAGAGCAGAGTCTTTGAAGTCTCGGGGAAGCGGGAGTTCAGAACTCAGGGGTTCTATTCGTTTAGATTCCTGGACTATAAATGCTCAATCGACTTCGTCAGATCACCATTCCTCGTACAAGAAACTATAAGTAGAACTCTAAGAGCGACACTCAGGCTCGACGTGATCCAAGATTCTTCCTCCAAGTACAGAGACGCTGATATAATCGTCTTCAACACAGGCCACTGGTGGACGCACCAGAAAACCTACAGAGGCCAGAATTACTTCCAGGAGGGCAAGCATGTGTACAACAAGCTAGAAGTGACAGAAGCATACACCAAAGCCTTAAGGACATGGGCGCAATGGGTCGACGCCAACATCGACTCTAACCGCACCAGGGTGTTCTTCCGGGGATTCTCAGCTTCTCATTTCAGAGGTGGGCAGTGGAATTCCTGTGGGAACTGCGACGGCGAGACGCGGCCGATAACAAACGAGACCCAGCTTTCGCCATATCCATGGATGATGAGGACCCTTGAGTCAGTGATAGCAGAGATGATAACACCGGTGTTGTATCTCAACATTACGAAAATGACAGACTACAGGAAAGACGGGCATCCCTCCATCTTTCGACAGCCGGAGGCGTCAAGGAGTAACGAAATGGTTCAAGACTGCAGCCACTGGTGCCTTCCTGGGGTTCCAGACTCGTGGAACGAGCTCCTCTATGCTACCTTGCTAACATCAAGCTATGGCTCGCGGAGTAATCGCTGGATTTCAGTGAAGAATTGA 1398 0.5136 MASLKNLFSTPLHAPRTLSFPISPPRTHFFVGSLRILSFFFFFSATFADTSPVVAAETLVSRLLPTSNRASPTTFCAHLVSNSHGTRTEGASLSAVKETRKSPRNSESDAVGDLSSCDIFDGNWVLDDSEPVYPPGSCPYIDDAFNCFKNGRPDSDYLRFRWKPQGCQIPRFDGRKMLKMLRGKRLMFVGDSLNRNMWESLVCALRESLVDKSRVFEVSGKREFRTQGFYSFRFLDYKCSIDFVRSPFLVQETISRTLRATLRLDVIQDSSSKYRDADIIVFNTGHWWTHQKTYRGQNYFQEGKHVYNKLEVTEAYTKALRTWAQWVDANIDSNRTRVFFRGFSASHFRGGQWNSCGNCDGETRPITNETQLSPYPWMMRTLESVIAEMITPVLYLNITKMTDYRKDGHPSIFRQPEASRSNEMVQDCSHWCLPGVPDSWNELLYATLLTSSYGSRSNRWISVKN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0122 465 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 169 446 IPR026057 GO:0016740
Vvi5g0122 465 Pfam PMR5 N terminal Domain 116 168 IPR025846 -
Vvi5g0122 465 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 67 444 IPR029962 GO:0016413
Vvi5g0122 465 MobiDBLite consensus disorder prediction 85 112 - -
Vvi5g0122 465 MobiDBLite consensus disorder prediction 85 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0122 Vvi-Chr5 1085706 1087504 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0122 - - vvi:100246507 959.518