Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0120 ATGAGAGGGCTTTCTTTAGCTTCTAGGGCTTCTCCTGCAATCAAGAATCTATCTGAAGAAGCATACAATCATAGGAAATTCAATAAAGAAAACCCCACAAAACGCAAACCCAAAGCAGCTCTCAATCCAAGGCCTACAGACAAGCTTGCAACTCCTTCAAGAGGTAAGTCTGGTTCCAAGAGCCCTAGTTTGTTTTTCAATTCAAACAGCCCCATTTCAGATCATAATCAGGAATTTCGCGTTAAATCGATCGATCATCAATATATTTCCGAGATTTTGTCGAGAGAGGACTGGTTTTTATTGATAAACCACGAGTATAAGGCGAAGAGGATCAGTTTGAATCCTCGGTTGGTGGTGAGCATTCTGCAGAACCAAGAAAACCCATTATATCCTCTGAGATTTTATGTCTGGGTTTTGAAGATCAACCCGTTGTTAGCTAAGAATCAGTCCGTTCGGGTTGCTTTAGCGAATGTTCTTAATAGGAAAGGTCCTGTTATATTGTCTGTTGAATTGCTGCAAGATATTAGAAATTCAGGTTGTGCGATTACCGAAGACTTGCTTTGTATTTTAATTGGTAGTTGGGGGAGGTTTGGATTGGCGAAGTATTGTGCAGAAGTTTTTGGGCAGGTTTCGTTTTTGGGTCTTAGTCCAAGCACTAGGTTGTATAATGCGGTCATTGATGCATTGGTGAAATCCAATTCACTTGACTTGGCGTACTTGAAATTCCAACAGATGTCTCTGGATAACTGCAATCCTGATAGGTTCACATACAATATTCTTATTCATGGAGTTTGCCGGATAGGTGTGGTGGATGAGGCACTTCGTCTAGTTAAGCAGATGGAGAGCTTGGACTGTTCACCTAATGTTTTTACTTATACCATTCTAATTGATGGGTTTTGTAATGCGAGAAGGTTTGATGAAGCCTTTAGGGTTTTAGAGACAATGAAGGGTAGAAATGTGAGTCCTAGTGATGCCACATTTAGGTCATTAGTTCATGGGTTGTTTCGCTCTATTGACCCGTCTAAGGCATTTGAGTTGTTATCAAGATTTTTAGAGAAGGAAGCTGTCTTGCCTAAAGTAGTTTGTGATACCATATTGTGTTGCCTCTCAAATAGCAAGATGCCAAAAGAGGCAGCCTTGTTTTTGAGGAAAGCACAAGAGAAGAGTTATTTCCCTGACAGTTCAACATTTAACATTATAATTACTTGTTTGATTAGAGAACTGGATGTCAATGAGACATGTGAAATATTGGATAGTTTTGTTGAGCAAGGTTTGAAACCATGTTTTAATACTTACATTTCACTTATTGAAGCTTTGTTCAAGGCAGGAAGAGATGGGGAGGGGAATCGTTACTTGAATGAGATGGTCCAAGTTGGACTTGTATCAAATGCTTTTTCATACAACATGGTTATTGATTGCTTCTGCAAAGCTGGTATGATGGACAGAGCATCAGAGACTTTCAGAGAAATGAAGGAAAGTGGCATTGATCCTAACATTGTTACTTTCAACACCCTTATTAATGGGTACTCAAAGAATGGGGAGATAGGCAAGGCAAGAGCTCTGTTGGAGATGCTTTTGGAGTATGGATTCAAGCCTAATATCTTTACTTTTAGTTCTATGATAGATGGCCTTTGTCGGGCACACCAGATCAGTGATGCTTTTAATTGTTTCAATGAAATGGTAGAGTGGGGTGTTGCTCCAAATGTTGTCACATACAATATCTTGATCCGCTCTTTGTGTGTTGTTGGGGATGTTGCTAAATCAATGAAACTTTTAAGAAGGATGCAAGCTAATGGAATAAGCCCAGACGTATTCTCTTTCAATGCTCTCATTCAAAGTTTTTGTAGAATGAATAAGGTTGAGAAAGCACAAAACCTTTTTGTTTCCATGTTAGCATTGGGCTTGAGTCCTGACAATTTTACATATTGTGCTTTTATTAAGGCATTGTGTGAATCAGGGAGATTTGATGAGGCAAAAGAGTTGTTCCTCTCAGTGGAAGCAAATGGATGTATTCCTGACTCTTATACATGTAACTTAATTATAGACGCCCTAATCCAACAGGCCCGGTTTGAAGAGGCCAAGGCTATAGCAAGGAAATATAGCAATCAGGGAATTTCCCCAAATTCTATACCTGTTTTATAG 2142 0.3931 MRGLSLASRASPAIKNLSEEAYNHRKFNKENPTKRKPKAALNPRPTDKLATPSRGKSGSKSPSLFFNSNSPISDHNQEFRVKSIDHQYISEILSREDWFLLINHEYKAKRISLNPRLVVSILQNQENPLYPLRFYVWVLKINPLLAKNQSVRVALANVLNRKGPVILSVELLQDIRNSGCAITEDLLCILIGSWGRFGLAKYCAEVFGQVSFLGLSPSTRLYNAVIDALVKSNSLDLAYLKFQQMSLDNCNPDRFTYNILIHGVCRIGVVDEALRLVKQMESLDCSPNVFTYTILIDGFCNARRFDEAFRVLETMKGRNVSPSDATFRSLVHGLFRSIDPSKAFELLSRFLEKEAVLPKVVCDTILCCLSNSKMPKEAALFLRKAQEKSYFPDSSTFNIIITCLIRELDVNETCEILDSFVEQGLKPCFNTYISLIEALFKAGRDGEGNRYLNEMVQVGLVSNAFSYNMVIDCFCKAGMMDRASETFREMKESGIDPNIVTFNTLINGYSKNGEIGKARALLEMLLEYGFKPNIFTFSSMIDGLCRAHQISDAFNCFNEMVEWGVAPNVVTYNILIRSLCVVGDVAKSMKLLRRMQANGISPDVFSFNALIQSFCRMNKVEKAQNLFVSMLALGLSPDNFTYCAFIKALCESGRFDEAKELFLSVEANGCIPDSYTCNLIIDALIQQARFEEAKAIARKYSNQGISPNSIPVL* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vvi5g0120 713 Gene3D Tetratricopeptide repeat domain 242 365 IPR011990 GO:0005515
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Vvi5g0120 713 MobiDBLite consensus disorder prediction 15 69 - -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat family 539 580 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat family 463 508 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat family 602 650 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat family 256 301 IPR002885 -
Vvi5g0120 713 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 503 709 - -
Vvi5g0120 713 Gene3D Tetratricopeptide repeat domain 515 616 IPR011990 GO:0005515
Vvi5g0120 713 Gene3D Tetratricopeptide repeat domain 422 514 IPR011990 GO:0005515
Vvi5g0120 713 Gene3D Tetratricopeptide repeat domain 617 712 IPR011990 GO:0005515
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 605 638 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 570 604 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 465 499 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 535 569 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 500 534 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 290 323 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 640 674 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 675 708 IPR002885 -
Vvi5g0120 713 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Vvi5g0120 713 MobiDBLite consensus disorder prediction 52 69 - -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Vvi5g0120 713 SUPERFAMILY HCP-like 301 574 - -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat 222 250 IPR002885 -
Vvi5g0120 713 Pfam PPR repeat 431 459 IPR002885 -
Vvi5g0120 713 Gene3D Tetratricopeptide repeat domain 144 241 IPR011990 GO:0005515
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vvi5g0120 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Vvi5g0120 713 MobiDBLite consensus disorder prediction 19 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0120 376 709 Glycosyltransferase AT1G05670 29.940 4.13e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0120 - - vvi:104879209 1414.05