Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0116 ATGTCTTACACCCAATTCTCAGTTCTTCTTCTTCTCCTAGCAGCTCTTCTCTGCTCATTCGCAGAAGCTCGAGAGCCTTTCGCATGCGACCCACGAAATGGGGTCACCAGAAACTTGCCTTTCTGTAGAGTATCTCTGCCAATCCAAGAGAGAGCCAGAGACCTAGTTGGAAGGTTGACATTGCAGGAGAAGATAAGGCTGCTGGTGAACAATGCCATAGACGTGCCCAGGCTGGGGATTAAGGGATACGAGTGGTGGTCGGAGGCTCTTCATGGGGTCTCCAACGTGGGTCCCGGCACCAAGTTCGGCGGCAGCTTCCCCGGCGCCACCAGCTTCCCTCAGGTCATCACCACCGCCGCTTCCTTCAACGCTTCTCTCTGGGAAGAGATCGGACGGGTGGTGTCCGATGAAGCAAGAGCAATGTACAATGGTGGAATGGCTGGTCTTACGTATTGGAGCCCGAACGTGAACATATTCAGAGACCCCAGATGGGGCCGAGGGCAGGAGACTCCAGGCGAAGACCCCGCCGTGGCCGCAAAGTATGCAGCGGCGTACGTAAGAGGTCTCCAAGGCAATGCCCGAGACAGATTGAAGGTAGCCGCATGTTGTAAGCACTACACCGCCTACGACCTTGATCACTGGGGCGGCATCGATCGATTCCATTTCAACGCCAGAGTTAGCAAGCAGGACTTGGAGGACACGTATGATGTTCCGTTCAAGGCGTGCGTGGTGGAGGGGAATGTTGCCAGTGTGATGTGCTCGTACAATCAGGTGAACGGGAAGCCCACATGCGCTGATCCTCATCTCCTCCGCGACACCATCCGCGGCGAGTGGAAACTCAATGGATACATAGTCTCGGACTGTGACTCGGTCGGGGTCTTCTACGATGAACAACACTACACTGCAACACCTGAAGAAGCTGCTGCTGTTGCCATTAAAGCTGGTTTGGATTTGGACTGTGGGCCGTTTCTTGCGATCCACACAGAGGCGGCCATAAGGGGAGGGAAGCTGACCGAGGCCGATGTAAATGGGGCCTTAATGAATACAATTTCGGTCCAGATGAGATTGGGAATGTTTGATGGGGAGCCTTCGGCCCAGCCCTACGGGAATCTGGGCCCAAGGGATGTTTGCACTCCGGCCCACCAGCAGTTAGCCCTTGAGGCGGCCCGACAAGGCATTGTTCTGGTTCAGAATCGTGGGCCAGCCCTGCCACTGTCCACGAGCCGTCACCGGACTATTGCTGTTATTGGGCCCAATTCTGATGTTACCGAAACCATGATTGGGAACTATGCCGGTGTTGCATGTGGTTACACAACTCCCCTGCAGGGAATTGGGAGATATGCAAGGACAATTCACCAGGCAGGTTGCTCGGGAGTTGCCTGCAGAGACGACCAGCAATTCGGAGCGGCGGTGGCTGCTGCTCGGCAGGCTGATGCTACAGTCCTAGTGATGGGATTGGACCAATCCATTGAAGCAGAATTCAGAGACAGGGTGGACATCCTCTTGCCTGGCCGCCAACAGGAGCTCGTATCAAAGGTAGCCGTGGCCTCCAGAGGCCCAACCGTGCTGGTCTTGATGTCTGGTGGCCCTATTGATGTGTCGTTCGCTAAGAACGATCCCCGCATTGCAGCAATCATCTGGGTGGGTTATCCTGGCCAAGCCGGAGGAACTGCCATTGCTGATGTTTTGTTTGGAAGAACCAATCCAGGAGGGAAGCTGCCTGTAACATGGTACCCGCAGAGCTACCTACGAAAGGCGCCAATGACGAACATGGCGATGAGGGCAATCCCTTCAAGAGGGTACCCTGGGAGGACCTACCGTTTCTACAATGGCCCAGTGGTGTTCCCCTTTGGACATGGCCTGAGTTACTCCACTTTTGCCCACTCTTTAGCCCAAGCTCCGACCACCGTTTCAGTCTCCCTCGCCAGCCTCCAAACCATCAAGAACTCAACCATAGTGAGCAGCGGAGCAATCAGGATCAGCCACGCCAACTGCAACACACAGCCACTGGGCTTCCACATTGATGTGAAGAACACTGGGACCATGGATGGGTCTCACACACTTCTCCTCTTCTCCACTCCACCCCCTGGAACATGGTCTCCCAACAAGCGGTTACTGGCTTTTGAGAAAGTTCATGTGGGGGCAGGGTCTCAGGAGAGGGTGAGATTTGATGTTCATGTCTGCAAACACCTCTCTGTAGTAGACCACTTTGGAATTCATAGAATTCCAATGGGTGAACACCATTTTCACATTGGAGATCTCAAGCATTCCATCTCCCTCCAAGCAACTTTGGAGGAGATCAAATCCAAGTAA 2313 0.5426 MSYTQFSVLLLLLAALLCSFAEAREPFACDPRNGVTRNLPFCRVSLPIQERARDLVGRLTLQEKIRLLVNNAIDVPRLGIKGYEWWSEALHGVSNVGPGTKFGGSFPGATSFPQVITTAASFNASLWEEIGRVVSDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPAVAAKYAAAYVRGLQGNARDRLKVAACCKHYTAYDLDHWGGIDRFHFNARVSKQDLEDTYDVPFKACVVEGNVASVMCSYNQVNGKPTCADPHLLRDTIRGEWKLNGYIVSDCDSVGVFYDEQHYTATPEEAAAVAIKAGLDLDCGPFLAIHTEAAIRGGKLTEADVNGALMNTISVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARQGIVLVQNRGPALPLSTSRHRTIAVIGPNSDVTETMIGNYAGVACGYTTPLQGIGRYARTIHQAGCSGVACRDDQQFGAAVAAARQADATVLVMGLDQSIEAEFRDRVDILLPGRQQELVSKVAVASRGPTVLVLMSGGPIDVSFAKNDPRIAAIIWVGYPGQAGGTAIADVLFGRTNPGGKLPVTWYPQSYLRKAPMTNMAMRAIPSRGYPGRTYRFYNGPVVFPFGHGLSYSTFAHSLAQAPTTVSVSLASLQTIKNSTIVSSGAIRISHANCNTQPLGFHIDVKNTGTMDGSHTLLLFSTPPPGTWSPNKRLLAFEKVHVGAGSQERVRFDVHVCKHLSVVDHFGIHRIPMGEHHFHIGDLKHSISLQATLEEIKSK* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0116 770 FunFam probable beta-D-xylosidase 7 51 365 - -
Vvi5g0116 770 Gene3D - 379 625 IPR036881 GO:0004553|GO:0005975
Vvi5g0116 770 Pfam Glycosyl hydrolase family 3 N terminal domain 106 346 IPR001764 GO:0004553|GO:0005975
Vvi5g0116 770 Pfam Glycosyl hydrolase family 3 C-terminal domain 393 623 IPR002772 GO:0004553|GO:0005975
Vvi5g0116 770 Gene3D Immunoglobulins 649 769 IPR013783 -
Vvi5g0116 770 SUPERFAMILY (Trans)glycosidases 39 392 IPR017853 -
Vvi5g0116 770 Gene3D - 51 367 IPR036962 GO:0004553|GO:0005975
Vvi5g0116 770 Pfam Fibronectin type III-like domain 688 753 IPR026891 -
Vvi5g0116 770 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 393 626 IPR036881 GO:0004553|GO:0005975
Vvi5g0116 770 PRINTS Glycosyl hydrolase family 3 signature 199 215 IPR001764 GO:0004553|GO:0005975
Vvi5g0116 770 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Vvi5g0116 770 PRINTS Glycosyl hydrolase family 3 signature 273 291 IPR001764 GO:0004553|GO:0005975
Vvi5g0116 770 FunFam probable beta-D-xylosidase 2 378 624 - -
Vvi5g0116 770 PANTHER SUGAR HYDROLASE-RELATED 16 758 IPR044993 GO:0009044|GO:0045493
Vvi5g0116 770 SMART Fn3_like_2 686 755 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0116 Vvi-Chr5 1049450 1053945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0116 8 764 Glycoside Hydrolase AT5G49360 72.215 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0116 - - vvi:100249978 1541.17