Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0113 ATGGAGGCAGAACGGAGCTTTCTGTTGATAATGGCAGTTGCAGCAATGGTGGTGACAGTGGGCGGACAAGGGTCAGGGACGAAGCCATTGGTGAAGGTGTTGAAGGGTGGACTCAAGGTGTGTGACAAAGGGTGGGAGTGCAAAGGGTGGTCCAAGTATTGCTGTAACCAGACCGTTTCCGATTTCTTCCAGACCTACCAGTTTGAGAACCTCTTCGCAAAGCGTAATACGCCTGTGGCACACGCGGTTGGCTTCTGGGACTACCGCTCTTTCATCACCGCCGCCGCCGTTTACCAGCCTCACGGATTTGGCACCGCCGGCGGGAAGCTCATGCAGATGAAGGAGGTGGCAGCTTTTCTAGGCCACGTCGGCAGCAAGACCACTTGTGGCTATGGAGTGGCGACAGGGGGCCCATTGGCCTGGGGACTATGCTACAACAAGGAAATGAGCCCCAGCAAATCTTACTGTGATGATGACTACAAATACACCTATCCCTGTACCCCTGGAGTCGAATACTTTGGCCGAGGCGCCTTGCCGATCTACTGGAACTACAACTACGGAGAAGCTGGGGAAGCCCTGAAGGTGGATCTGCTGAACCATCCAGAATACATAGAACAGAACGCCACCCTAGCCTTCCAGGCTGCGATTTGGAGGTGGATGACCCCAGTGAAGAAGCAGCAGCCCTCGGCCCACGACGTCTTTGTAGGGACCTGGAAGCCCACCAAGAACGACACTCTGGCCAAGCGGATTCCTGGGTTCGGCGCCACAATGAACGTTCTGTATGGCGATTCTGTCTGCGGCCAGGGTGACGTCGATTCCATGAACAACATCGTCTCCCACTACCAGTACTACCTTGACCTGATGGGTGTCGGCCGTGAGGAAGCAGGGCCTCATGAGGTTCTCACCTGCGCCGAGCAGGAGGCTTTCAACCCGTCATCTTCTTCATCTTCTTCTTCATCTTCTTGA 966 0.5518 MEAERSFLLIMAVAAMVVTVGGQGSGTKPLVKVLKGGLKVCDKGWECKGWSKYCCNQTVSDFFQTYQFENLFAKRNTPVAHAVGFWDYRSFITAAAVYQPHGFGTAGGKLMQMKEVAAFLGHVGSKTTCGYGVATGGPLAWGLCYNKEMSPSKSYCDDDYKYTYPCTPGVEYFGRGALPIYWNYNYGEAGEALKVDLLNHPEYIEQNATLAFQAAIWRWMTPVKKQQPSAHDVFVGTWKPTKNDTLAKRIPGFGATMNVLYGDSVCGQGDVDSMNNIVSHYQYYLDLMGVGREEAGPHEVLTCAEQEAFNPSSSSSSSSSS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0113 321 Pfam Chitinase class I 67 293 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vvi5g0113 321 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Vvi5g0113 321 Gene3D - 67 309 - -
Vvi5g0113 321 Gene3D Endochitinase, domain 2 147 206 - -
Vvi5g0113 321 CDD chitinase_GH19 67 303 - -
Vvi5g0113 321 PANTHER CHITINASE-RELATED 11 307 - -
Vvi5g0113 321 FunFam Endochitinase (Chitinase) 147 206 - -
Vvi5g0113 321 SUPERFAMILY Lysozyme-like 59 310 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0113 Vvi-Chr5 1016146 1018381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0113 25 309 Glycoside Hydrolase AT3G16920 81.818 1.14e-180 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0113 - - vvi:100261982 639.032