Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0109 ATGCACTCTTCGCTCTCTCTCTCCTTCTCCTCCTCCACAGCCATTCCCAGATCAGGCCACTCCTCCGAGCTCTCCTGCGCCGCTCCACCTAGTCCTCTCAATCTCCGCTTCTGTGGCCTCAGAAGAGAAGCCTTAGGGTTTTCGTCTCCGAAACGAAATGATTCTTGTCGAGTCATCGTCTCCAGTCGAGGACGCTTCAAGAAGGTTTCAGCTTCGGTATCAGACAATGGAAGTGCTCCGAAGGCGTTCGACTACGATTTGGTTATTATCGGAGCTGGCGTTGGTGGCCATGGAGCTGCTCTGCATGCCGTCGAGAAGGGTCTGAAAACTGCCATCATTGAGGGAGATGTGGTGGGTGGAACATGTGTAAACAGAGGTTGTGTTCCTTCTAAAGCTCTTCTGGCTGTAAGTGGTCGAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACCTTGCTTCTAAAATTCGTAATAATTTGACTAATTCAATGAAAGCATTGGGTGTGGACATATTAACAGGCGTTGGAACAATTTTGGGCCCTCAAAAGGTGAAATATGGAAAGGTTGGCTTCTCTGAGAATGTAATAACTGCAAAAAATATAATCATTGCTACTGGTTCTGTTCCTTTTGTCCCAAAAGGGATTGAAGTTGATGGGAAGACTGTTATTACCAGCGATCATGCGCTCAAACTGGAGTCTGTTCCTGATTGGATAGCCATTGTAGGAAGTGGTTATATTGGTCTTGAATTCAGTGATGTGTATACAGCACTTGGAAGTGAGGTAACTTTTATTGAAGCTCTTGATCAGCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAGGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAGTAATTGATGCTGATGGAAATCTGGTTCCTCACTTGTATTGCATAGGTGATGCAAATGGTAAAATGATGCTTGCTCATGCAGCAAGTGCACAAGGAATTTCAGTTGTTGAGCAAGTTACCGGAAAGGATCATGTGCTCAATCATTTGAGCATCCCAGCAGCTTGTTTCACTCATCCAGAAATCAGTATGGTTGGATTGACTGAGCCTCAAGCAAGGGAGAAAGCTGAAAAGGAGGGATTTGAAGTAAGTGTTGCAAAGACAAGCTTTAAGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGTTGCATGCTGCAGACCTTATCCATGAAGCATCCAATGCTATAGCACTAGGCACACGTATTCAGGACATAAAATTTGCTGTTCATGCGCATCCAACCTTGTCAGAAGTGCTGGATGAACTCTTTAAATCAGCTAAGGTTCATGCTCATGTTCCTAGTCCCGTAAGTGAACCAGTTACAGTTTAA 1716 0.447 MHSSLSLSFSSSTAIPRSGHSSELSCAAPPSPLNLRFCGLRREALGFSSPKRNDSCRVIVSSRGRFKKVSASVSDNGSAPKAFDYDLVIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKALGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGVDILTGVGTILGPQKVKYGKVGFSENVITAKNIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFASKITPAKDGKPVRIELIDAKTKEPKDALEVDAALIATGRAPFTNGLGLENISVVTQRGFIPVDERMRVIDADGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGKDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVHAHVPSPVSEPVTV* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0109 571 PANTHER DISULFIDE OXIDOREDUCTASE 82 555 - -
Vvi5g0109 571 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 439 550 IPR004099 -
Vvi5g0109 571 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 119 129 IPR012999 GO:0016668
Vvi5g0109 571 PIRSF Hg-II_reductase_MerA 44 553 IPR001100 GO:0016491
Vvi5g0109 571 Gene3D - 86 421 IPR036188 -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 352 366 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 435 456 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 526 546 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 86 108 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 222 231 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 258 283 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 118 133 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 400 407 - -
Vvi5g0109 571 PRINTS Pyridine nucleotide disulphide reductase class-I signature 504 519 - -
Vvi5g0109 571 Gene3D - 438 561 IPR016156 GO:0016491|GO:0050660
Vvi5g0109 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 351 367 - -
Vvi5g0109 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Vvi5g0109 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 87 106 - -
Vvi5g0109 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 258 276 - -
Vvi5g0109 571 PRINTS FAD-dependent pyridine nucleotide reductase signature 385 407 - -
Vvi5g0109 571 Pfam Pyridine nucleotide-disulphide oxidoreductase 85 420 IPR023753 GO:0016491
Vvi5g0109 571 SUPERFAMILY FAD/NAD(P)-binding domain 79 429 IPR036188 -
Vvi5g0109 571 FunFam Dihydrolipoyl dehydrogenase 438 561 - -
Vvi5g0109 571 Gene3D - 231 358 IPR036188 -
Vvi5g0109 571 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 438 553 IPR016156 GO:0016491|GO:0050660
Vvi5g0109 571 MobiDBLite consensus disorder prediction 1 25 - -
Vvi5g0109 571 FunFam Putative dihydrolipoyl dehydrogenase 231 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0109 Vvi-Chr5 964767 972911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0109 1 557 Acyl Lipid Metabolism Gene Families AT4G16155 85.663 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0109 K00382 - vvi:100246616 1102.81