Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0104 ATGGATATATTATCTGGACATGAAAATGATGTTAATTATGTGCAATTCAGTGGTTGTGCTGTATCATCTAGATTTTCCGTGGCTGAATCCTCGAAGGAAGAGAATGTTCCAAAATTCAAAAATTCCTGGTTTACTCATGATAATATAGTCACCTGTTCTCGGGATGGCAGTGCAATTATATGGATTCCAAGATCACGCAGATCACATGGAAAGGTTGGTCGTTGGACACGGGCGTATCATCTCAAAGTTCCACCTCCACCAATGCCTCCTCAACCCCCACGAGGAGGTCCGCGTCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATTGTGTGGAGCCTGGACAATCGCTTTGTCCTTGCTGCTATTATGGATTGCAGAATATGCGTCTGGAATGCTGTTGATGGTAGTTTGGTACATTCTTTGACAGGTCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAACCCCCGGATTGCCATGAGTGCTGGCTACGATGGGAAAACCATAGTGTGGGATATATGGGAAGGCACACCTATCCGGATCTATGACACTGCACGTTTCAAGTTGGTTGATGGGAAGTTTTCACCGGATGGAACGTCAATTATACTCTCTGATGATGTTGGTCAACTATATATATTAAGTACGGGTCAAGGCGAGTCCCAAAAGGATGCTATGTATGATCAGTTCTTCCTCGGGGATTATCGTCCTCTTATACAGGATACATATGGAAATGTCCTTGACCAGGAAACTCAGCTTGCACCATATCGGAGGAATATGCAAGATCTGCTTTGTGATGCAACCATGATACCATACCCAGAACCCTATCAGAGCATGTATCAGCAGCGGCGATTAGGAGCTCTGGGAATTGAATGGCGTCCTTCCTCACTGAGATTGGCTGTTGGGCCAGATTTCAATCTGGACCAAGATTACCAAATGTTACCATTGCCTGACTTGGATGTATTGATTGATCCATTACCAGAATTTATAGATGTCATGGATTGGGAACCTGAAAATGAAGTGCAAACTGATGATACTGATTCAGAGTATAATGTTACTGAGGAGTATTCTACTGGAGGGGAACAAGGAAGCTTAAGTTCCAATTCCTCTGGTGATCCAGAGTGCAGTGCAGAAGATAGTGATGTTGAGAACTCTCATAAAGATGGCCTCCGCAGATCAAAAAGGAAAAAGCAGAAGGCAGAAACTGAGATCATGACTTTTTCTGGGAGGCGAGTTAAAAGGAGAAATTTAGATGAGTTTGATGGTAATTCACTCAGAAGTAACAGGACTAGAAAATCAAGAAGTGGCCGAAAAGTTTCCCACAAAAATTCTTCTAAATCGAAGTCATTGAGACCTCAGAGAGCTGCTGCTCGCAATGCTCTTACTTTGTTTTCCCGAATGAAAGGAACATCTACAGATGGAGAAGATGAAGATGGCTCTGAAGGTGATTTGTCAGAAAGTGAATCCTCACTGGAAGATTCTAACATTGAGAGTGATGAATCCGATGGTTCTTTGCAAAATGAGCAATGCAAACATTCAAAAGGAAAAGAAGTATCCTTGGATGAGTTTGAAGATATGGATAAACAGCATGAGCATCCTGAATCTTGTATGAATGCGGGAAACAGAAGGAGATTGGTCCTTAAATTCCCAATTCGTGATTCAAATAGACTTTTGTTGGCTCCAGAGAACCAGGCTGATTTAGTGGGGTCATCATCTAAAGCTCCTCAGGAAGCCTCTGAAGTAAATAGGAATCATTTAAGCTCCCAGGATCTGGGGTACTCTTCTAGTGATGCAAATTGCAATAGAATCGAAAGAAGAGAGAGGGGGCAACCTGAAAAGATTGAAGATCATTTAGACCTGTTTGAAGGATACAAGGATGGGAAAATTAGATGGGGAGGAGTCAAGGCTCGCACATCCAAACGTCTGAGGGTGGTGGAACCCATGCCTTCAGACACTGACGCTAGATCTAGACAATGCATTGATGGTCATGATGCAACTGAAAACACTATCAATGGATTCCAAGAACCTGAAAAGAATTATGACAGAATATCCCCTCATTCAGAAATCAAATATCATGTAGAAGAGACAGGCAAAATGGCTCATATGAATGGGCAACATTTTGGGAATGGTGCTGTTGAGGGTCTGGATGCTACATCAAATGGAAAAAAGCACTCTAGCTTCAATGAGTGCATGAATTATGATGAACCACCAAAACAGGTGAACATGGTTGCTGGTGACACAGCTGCATCTTCTGTCCAGCATTCTAATGGGACTGACCACCCTCCTCATTTGAAAGAGAGCTCTACATCATCGACAAAGTTAAGGATAAGGTCAAAAAAGATTTTAGAAGATCCTGAAATTCCTTCTGATCCAAAAATTAAATCTTCAGTAGAAGATTGGAGCAATGGTCGATGTGACACATTATCTGAAAGTCAATTGGAAATTGCAGAAGTGCCTGACTGTGATGATACAGATAGACCCCATTCGGATCATGGAGATTGGAATGGATTGCTTAAGTCTGAGGCTGCAATTGAGCAAAATTCCAGGTCAGTTTTGCAAGACTCACAGGGGCTATATTCACATGTAAACAATAAGATGTACAATGCTGTTTACAGAAGGTCAAGGTCCTACAGGACTAGAACTAATTCAGAAGGTGAGGGTGGTGGCATGGAAGAAAGCACTTCAAATGCGAGCAATCATAATCTTGATTCAGGCATGGATTTCCATGAAGCAACAACTGATGGGGCTCGTAGGACACGGTCCATGGGACTGAAGGCAACTACACGCGACCCAGATGTGACTTGCAGTAATCTCAAGTTGAGGCTAGGCCATGGATCAGAAGATACATTAAAAAGTGTCGATAAGTTTTCTGTGAATAGATCTGATGAACTTCCATGTGAAGAATGGATGTCAAGTTCTAGGATGACAGTTGGGCTGAGATCTGCTAGAAACAGGAGGGCCAGTTATCATGTTCGTGATACAAGTCCAAGTCCAATGGAGAGACGGAAGCCACATCAATCATCAAAAAAGGTGTCTTGGTTGATGTTGTCAATGCATGTGGAACCCCGATATATCCCCCAGCTGGGTGATGAAGTTGTATATCTGAGACAGGGCCATCAGGAGTATATAACTTATAGTGGCTCACATGAAGCAGGCCCTTGGACATCAGTCAAGGGAATCATAAGAGCTGTAGAATTTTGTAAAGTTGAAGGCCTTGAATATTCTCCATTTGCAGGTTCTGGTGATAGCTGCTGTAAAATGACACTTCAATTTGTAGATCCTACTTCCCATGTGTTTGGTAAAACATTCAAGTTGACCCTGCCTGAAGTGACCAGCTTCCCAGACTTTCTTGTTGAAAGAACTCGGTATGATGCTGCTATCCAGAGGAATTGGACTTCTAGGGACAAGTGCCGAGTCTGGTGGAAAAACGAGGGTGAGGAAGATGGGAGTTGGTGGGATGGACGGATCTTATCTGTGAAGGCCAGATCTCCTGAATTCCCAGACAGTCCATGGGATAGATATGTTATTCGGTACAGGAGTGAACCAACAGAAACACATCTGCACAGTCCGTGGGAACTTTATGACATTGGTACTCAGTGGGAGCAGCCTCATATTGATGATGAGAGCAGAAACAAACTATTATCTTCACTTGCCAAATTAGAACAGTCGGGAGACAAACCTCAGGACTACTATGGGATTCAAAAACTGAAACAAGTCTCACAGAAGTCAAATTTTTTGAACAGGTTTCCGGTTCCGCTGTCTCTTGAAGTGATCCAATCAAGGTTAAAGAACCAGTATTACAGAAGTATGGAGGCAGTGAAGCATGATGTCAAGGTCATGCTATCAAATGCTGAAACATACTTTGTAAAAAATGCGGAGCTTTCAATGAAAGTGAGGCGCCTATCAGAGTGGTTTACACGGATGCTTTCATCTATATAA 3948 0.4263 MDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAETEIMTFSGRRVKRRNLDEFDGNSLRSNRTRKSRSGRKVSHKNSSKSKSLRPQRAAARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPENQADLVGSSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLFEGYKDGKIRWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEIKYHVEETGKMAHMNGQHFGNGAVEGLDATSNGKKHSSFNECMNYDEPPKQVNMVAGDTAASSVQHSNGTDHPPHLKESSTSSTKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGRCDTLSESQLEIAEVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSRSVLQDSQGLYSHVNNKMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHEATTDGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSSRMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVEPRYIPQLGDEVVYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVEGLEYSPFAGSGDSCCKMTLQFVDPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRNWTSRDKCRVWWKNEGEEDGSWWDGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSPWELYDIGTQWEQPHIDDESRNKLLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFPVPLSLEVIQSRLKNQYYRSMEAVKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLSSI* 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 750 772 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 571 614 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 750 806 - -
Vvi5g0104 1315 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 355 378 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 382 431 - -
Vvi5g0104 1315 SUPERFAMILY WD40 repeat-like 4 223 IPR036322 GO:0005515
Vvi5g0104 1315 CDD Bromo_WDR9_I_like 1187 1314 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 433 451 - -
Vvi5g0104 1315 Pfam Bromodomain 1244 1296 IPR001487 GO:0005515
Vvi5g0104 1315 Gene3D - 1 234 IPR015943 GO:0005515
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 342 523 - -
Vvi5g0104 1315 SMART bromo_6 1206 1314 IPR001487 GO:0005515
Vvi5g0104 1315 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 185 IPR001680 GO:0005515
Vvi5g0104 1315 SMART WD40_4 95 133 IPR001680 GO:0005515
Vvi5g0104 1315 SMART WD40_4 136 176 IPR001680 GO:0005515
Vvi5g0104 1315 SMART WD40_4 1 62 IPR001680 GO:0005515
Vvi5g0104 1315 FunFam PH-interacting protein isoform X1 36 234 - -
Vvi5g0104 1315 ProSiteProfiles Bromodomain profile. 1255 1298 IPR001487 GO:0005515
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 479 502 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 507 523 - -
Vvi5g0104 1315 PANTHER WD REPEAT DOMAIN 9 1 1312 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 571 602 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 877 907 - -
Vvi5g0104 1315 MobiDBLite consensus disorder prediction 773 802 - -
Vvi5g0104 1315 SUPERFAMILY Bromodomain 1246 1314 IPR036427 GO:0005515
Vvi5g0104 1315 Gene3D - 1207 1315 IPR036427 GO:0005515
Vvi5g0104 1315 FunFam WD40/YVTN repeat-like-containing domain 1209 1315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0104 Vvi-Chr5 918856 927399 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0104 K11797 - vvi:100248159 2579.28