Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0103 ATGGCTGCAATGGTGCTTCTTCTCGGGTTTTTATTGGCAACCCTTCAGATAACAGGAGTGAAATCAGTGGGTGTATGCTATGGAATGCTAGGCAACAATCTACCACCAGCATCACAAGTGGTAGCTCTGTATAAATCTCGCAACATCGACCGCATGAGAATCTACGATCCAAATCAAGCAGCTCTTCAAGCCCTTAGGGGCTCCAACATTCAACTCATGCTGGGTGTCCCAAACTCGGACCTCCAAGGCCTCGCCACCAACCCTTCCCAAGCACAGTCATGGGTTCAAAGAAATGTGAGGAACTACTGGCCCGGCGTCAGTTTCCGGTACATCGCAGTCGGGAACGAAGTGAGTCCCGTCAATGGAGGCACATCACGGTTTGCGCAGTTTGTTCTGCCGGCCATGCGAAACATACGAGCAGCACTCGCATCAGCAGGCCTCCAGGACCGAGTCAAGGTCTCCACCGCAATCGACTTAACACTTCTGGGCAACTCCTACCCTCCATCTCAAGGCGCTTTCCGGGGAGATGTGAGGGGTTATTTGGATCCCATCATCCGCTTCCTGGTAGACAATAAGTCGCCGCTTCTGGCGAATATATACCCTTATTTCAGCTACTCAGGCAACCCCAAGGACATATCTCTTCCCTACGCTTTGTTCACTGCAAATTCAGTTGTTGTATGGGACGGCCAGCGCGGGTATAAGAATCTGTTCGATGCCATGCTAGATGCTCTGTACTCGGCTCTGGAGAGGGCCGGAGGGGCGTCGTTGGAGGTGGTGCTGTCGGAGAGTGGCTGGCCGTCTGCCGGGGGATTTGGGACTACGGTTGATAATGCAAGGACTTATAATTCGAATTTGATCCGCCACGTCAAAGGCGGGACTCCGAAGAGGCCAGGAAGAGCCATAGAGACTTACCTCTTTGCCATGTTTGATGAGAACAAGAAGGAGCCGCAGTTGGAGAAACATTTTGGGCTTTTCTTTCCAAACAAACAGCCGAAGTACTCTATCAACTTTTCTGGAGAAAAACCTTGGGATGTGTCTAGTGAAAATGATACAAATGAAGAATCCCTCAAGAGTGACATATAA 1083 0.506 MAAMVLLLGFLLATLQITGVKSVGVCYGMLGNNLPPASQVVALYKSRNIDRMRIYDPNQAALQALRGSNIQLMLGVPNSDLQGLATNPSQAQSWVQRNVRNYWPGVSFRYIAVGNEVSPVNGGTSRFAQFVLPAMRNIRAALASAGLQDRVKVSTAIDLTLLGNSYPPSQGAFRGDVRGYLDPIIRFLVDNKSPLLANIYPYFSYSGNPKDISLPYALFTANSVVVWDGQRGYKNLFDAMLDALYSALERAGGASLEVVLSESGWPSAGGFGTTVDNARTYNSNLIRHVKGGTPKRPGRAIETYLFAMFDENKKEPQLEKHFGLFFPNKQPKYSINFSGEKPWDVSSENDTNEESLKSDI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0103 360 SUPERFAMILY (Trans)glycosidases 23 337 IPR017853 -
Vvi5g0103 360 FunFam glucan endo-1,3-beta-glucosidase, basic 23 337 - -
Vvi5g0103 360 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
Vvi5g0103 360 Gene3D Glycosidases 22 338 - -
Vvi5g0103 360 MobiDBLite consensus disorder prediction 346 360 - -
Vvi5g0103 360 MobiDBLite consensus disorder prediction 337 360 - -
Vvi5g0103 360 Pfam Glycosyl hydrolases family 17 23 337 IPR000490 GO:0004553|GO:0005975
Vvi5g0103 360 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 337 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0103 Vvi-Chr5 894898 896096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0103 29 341 Glycoside Hydrolase AT4G16260 65.714 8.76e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0103 - - vvi:100232986 723.005