Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0099 ATGGCAGAGGACAAGTACAATCTGAAGAACCCAGGTGTGAAGAGAATTTTACAGGAAGTGAAGGAGATGCAATCGAATCCTTCCGATGATTTCATGAGCCTCCCTCTTGAGGAGAATATATTTGAATGGCAATTTGCAATCAGGGGACCCAGTGATACTGAATTTGAGGGAGGCATCTATCATGGACGGATCCAGTTGCCTGCAGAATATCCGTTTCAGCCTCCTTCATTTATGTTGTTGACTCCAAATGGTCGTTTTGAAACCCAAACCAAGATATGTTTAAGCATATCAAATCATCATCCTGAGCACTGGCAGCCATCATGGAGTGTTCGGACTGCTTTGGTAGCATTAATTGCATTCATGCCCACCAGCCCAAATGGTGCATTGGGTTCATTAGATTATAAGAAGGAAGAGAGGCATGCTCTGGCCATCAAATCTCGTGAAGCAGCTCCAAAATTTGGGACTCCTGAACGTCAGAAGCTCATTGATGAGCTCAACTCTTCGCAGGCTCCTGAAGAACCCTCCACCAACAGGGAGGGCGAAGGACAGACGAATCCTCCAAATGGCAGTGCCATAGCTGCTGCAGATGAGCTTTCAGATCCAAGAGTGGCTGACAGGATAGTTGAGGAGGAACCACCGCAGGTTCCCTTGAATGCTAATCCCAGCCCTGTATCAAGACAGGCTTCAGCAGCGCGACTGCTGCAGAAGCCCATGCCAAGGGTTCAAAGGCAGGCTGATGATCGCTTGCTTACATGGGCTGCCGTTGGACTTACCATTGCAATTATGGTTCTTCTGCTGAAGAAGTTTTTGAAATCCAGTGGGCATGGTGCCGTTTTCATGGATGAGTCCTAG 852 0.4777 MAEDKYNLKNPGVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPSDTEFEGGIYHGRIQLPAEYPFQPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDELNSSQAPEEPSTNREGEGQTNPPNGSAIAAADELSDPRVADRIVEEEPPQVPLNANPSPVSRQASAARLLQKPMPRVQRQADDRLLTWAAVGLTIAIMVLLLKKFLKSSGHGAVFMDES* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0099 283 CDD UBCc 13 128 IPR000608 -
Vvi5g0099 283 MobiDBLite consensus disorder prediction 165 193 - -
Vvi5g0099 283 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 162 IPR000608 -
Vvi5g0099 283 MobiDBLite consensus disorder prediction 165 190 - -
Vvi5g0099 283 Pfam Ubiquitin-conjugating enzyme 15 126 IPR000608 -
Vvi5g0099 283 SUPERFAMILY UBC-like 13 133 IPR016135 -
Vvi5g0099 283 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 126 - -
Vvi5g0099 283 FunFam ubiquitin-conjugating enzyme E2 32 2 175 - -
Vvi5g0099 283 SMART ubc_7 14 155 - -
Vvi5g0099 283 Gene3D Ubiquitin Conjugating Enzyme 2 184 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0099 Vvi-Chr5 854298 857791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0099 1 282 Miscellaneous Gene Families AT3G17000 62.025 2.39e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0099 K10578 - vvi:100260130 562.377