Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0097 ATGGAATGTTTTGGAGGCTCTGGGTTCACTGTTGCAGGCTGCACTATAAGGAGGAAGAGGAGCAGCATATCTCGACGGCCACGCCCTGAGTCACAAACATTTCCAGAGAGCAGTAATCTTTTCCCATTGTCCTTGACACCACCTTTAAACAGGAGTGAAGGTGAAACTGCCCCTAAAAGGAGCAGGAAGGACAACGGAGGATTTGGAGATATCAATTCATTTGACAGAAATGATCATTTGAAAAATGGGTCAGATTTTAAAGTGGGTAATGATGGTGCCCATTTAGGCCGAGGAAGGAATGGTGATAATTGGAATTCAAGGGAGTCAACTGTTGTTTCTGATGGAATAGGAAGCGAGAACAAGCTGAAAAAGGTAAAGCTCAAGCTTGGTGGTGTTACTCGAACAATTCACACCAATGCTGCATCAGAGTTTGCCTTCAGTGATGGCTCTTTTGCCACAAAAACCTCACGTTCTTCAGATGCTCGCCAGCCCCATCTGAAGCTGAGTTTTCAGGATAACATTGATAGCAGCCAATCCAGTGCTCTAGATAAGGGGAAAGGCTTGCAAGGGGTCCCTTGGAAGGATTTCTCCAGAAGTGTTTCTGTGAATGGAACACACAAATCTGAGCCAGTTCGTAAGAGTAAGCGGGTTCCTAAGAGACGCATGTTGGACGTGGGATTTAATGATGATGATGAAGATGAGGAAATCCGATACCTTGGTAAGCTCAATGCCTCCAAGGTTGCTGGAGATCATCAAGGGGAAGATAAAGATGACATTGGTGCTTATAATTCGCCAAGGTTGGGTAAAGATGGTAAAAAGAAGTCTAGATCAGGGAAAGTATATGAAGATAGAGACTACATGGAAGATGAAGAACTAACATCAGACGATGAACCTGAAGCTAAAAGGAAAAGGCCAAGAAAGGAATCTCTTGACTCACTTGTAGAAGGAAGAAAGGAGATGACTTTCACAACACGTAGACAAGCCCTTCTATTTGGAAAAGATACGTTTTCAGGATCTGATGCAGGACTTGTTGAGCTACCAAATGGTTTGCCTCCTGCCTCATCCAAAAAGCAAAAGGAGAAACTCTCTGAAGTGGAGCAGCAACTGAAGAAAGCAGAGGCTGCTCAGAGACGTAGGATACAGTCAGAAAAGGCAGCTAGGGAGGCTGAGGCTGGGGCAATCAGAAAAATACTTGGTCAAGATTCTGCTAGAAAGAAAAGGGAAGAGAAGAAGAAGCTGCGAGATGAATTAGCACAGGGGAGAGCTGCCAACGCTGTGGCACTCGCATCCAACACTATCAGATGGACCATGGGTCCCACTGGAACAACCGTTACATTTTCTGAAGATATTGGTCTCCCAAATATATTCAACCATGTCCCCTCCAGTTATCCACCACCACGTGAAAAATGTGTGGGTCCAAATTGTACAAATGCATACAAGTATCGGGATTCCAAGTCAAATCTTCCACTCTGCAGCTTACGCTGTTACAAGGCTATACATGAACAGGTGTGGCCTTTACTTGCCTGCTAA 1530 0.4477 MECFGGSGFTVAGCTIRRKRSSISRRPRPESQTFPESSNLFPLSLTPPLNRSEGETAPKRSRKDNGGFGDINSFDRNDHLKNGSDFKVGNDGAHLGRGRNGDNWNSRESTVVSDGIGSENKLKKVKLKLGGVTRTIHTNAASEFAFSDGSFATKTSRSSDARQPHLKLSFQDNIDSSQSSALDKGKGLQGVPWKDFSRSVSVNGTHKSEPVRKSKRVPKRRMLDVGFNDDDEDEEIRYLGKLNASKVAGDHQGEDKDDIGAYNSPRLGKDGKKKSRSGKVYEDRDYMEDEELTSDDEPEAKRKRPRKESLDSLVEGRKEMTFTTRRQALLFGKDTFSGSDAGLVELPNGLPPASSKKQKEKLSEVEQQLKKAEAAQRRRIQSEKAAREAEAGAIRKILGQDSARKKREEKKKLRDELAQGRAANAVALASNTIRWTMGPTGTTVTFSEDIGLPNIFNHVPSSYPPPREKCVGPNCTNAYKYRDSKSNLPLCSLRCYKAIHEQVWPLLAC* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0097 509 SMART PAPA_1_2 366 450 IPR006880 GO:0031011
Vvi5g0097 509 Coils Coil 355 385 - -
Vvi5g0097 509 Coils Coil 403 423 - -
Vvi5g0097 509 PANTHER INO80 COMPLEX SUBUNIT B 13 502 IPR029523 GO:0006338|GO:0031011
Vvi5g0097 509 MobiDBLite consensus disorder prediction 152 184 - -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 27 51 - -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 248 286 - -
Vvi5g0097 509 Pfam HIT zinc finger 466 497 IPR007529 -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 296 317 - -
Vvi5g0097 509 Pfam PAPA-1-like conserved region 366 449 IPR006880 GO:0031011
Vvi5g0097 509 MobiDBLite consensus disorder prediction 342 361 - -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 15 112 - -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 152 228 - -
Vvi5g0097 509 MobiDBLite consensus disorder prediction 242 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0097 Vvi-Chr5 844628 847579 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0097 - - vvi:100261960 983.4