Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0088 ATGCATCTCAAGCTGAAGCTCTCTTCTCCCTCTTCTCCGTCCAACTTCTCTCTTTACTCTCCTTCTCAAAACCCTAGCTCCTCCAAATTTTCCTTTAAAGTACCAATTGTACCCCTCCACTCCTCACTCTCACCTCTCACCCTTCCTCCATGCGCCTCCAAGGACTCCTCCTCCCCACTCCTCGAGCAAAAGCCTCATTCCTCCGGCTTCGGATCAGAGCCGCAGTCGCCGCCGGAAGTTCTTACGGTCCGCCGTCCGATGAAGGAATATTCCGGAGACGATGATGAGTCCAGCAACGGAGATGATGTGGATGAGGACACGTTCTCTTCCTCGCCGATCGATGCCGGACTTGCTGAATTTGCGAAGAAGTTGCCAATGTTTGAGCCGCAGAGAGCGGAGTTGAGCTCTGAGGAGAGGCCGCTTTTGGTGAATTTGGACTTAGCGTTGTATAGAGCCAAGGTTTTGGCGAGGAATTATCAGTTTGAAGAAGCGGAGAAGATTCTGCAGAAGTGTATATACTATTGGCCAGAAGATGGACGGCCGTATGTGGCTTTAGGGAAGATCCTGAGCAAACAGTCGAAAACTTCGGAAGCTAGAGCTGTTTATGAGAAAGGCTGTCAGGCTACTCAAGGTGAAAATCCTTACATCTGGCAGTGCTGGGCTGTGCTGGAAAATAAGATGGGGAACATTAGGAGAGCAAGAGATTTGTTTGATGCTGCCACAGTTGCTGATAAGAGGCATGTTGCTGCCTGGCATGGGTGGGCAGTTTTAGAGTTAAAACAGGGGAATATAAAGAAGGCAAGGCATCTTCTTGCTAAAGGTCTTAAATATGGTGGTGGAAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAAAGCAAATCGGCATGAGCAGGCTCGGTATTTGTTCAAGCAGGCCACCAAGTGCAATCCCAAGAGCTGTGCCAGTTGGCTTGCATGGGCACAATTGGAGATGCAACAGGAAAACAACCATACTGCAAGGCAACTATTTGAGAAAGCAGTCCAGGCAAGCCCCAAGAATAGGTTTGCATGGCATGTATGGGGAGTTTTTGAAGCTAATCTGGGCAATGCTGACGTGGGAAGGAAACTTTTAAAGATAGGCCATGCAGTAAATCCAAGGGATCCTGTTCTCCTTCAGTCCCTTGCTTTACTGGAATACAAATATTCAACTGCAAATCTTTCTCGAGTGCTGTTCAGGAGAGCATCCGAATTGGATCCAAGGCATCAGCCAGTATGGATTGCTTGGGGATGGATGGAGTGGAAAGAAGGAAACATAGCCACAGCAAGGGAAATGTATCAAAGAGCACTGTCCATTGACTCAACTACTGAAAGTGCTGCTCGTTGTCTTCAGGCTTGGGGTGTTTTAGAAGAGAGAGCTGGTAATCTATCAGCAGCTCGGAGATTATTCAGATCCTCCCTAAATATAAATTCCCAGAGTTACATAACATGGATGACATGGGCCTCATTTGAAGAAAACCAAGGAAATGCTGTTCGTGCTGAGGAAATTCGTGACCTCTATTTCCAGCAGGAACCAAACAAATAA 1569 0.4723 MHLKLKLSSPSSPSNFSLYSPSQNPSSSKFSFKVPIVPLHSSLSPLTLPPCASKDSSSPLLEQKPHSSGFGSEPQSPPEVLTVRRPMKEYSGDDDESSNGDDVDEDTFSSSPIDAGLAEFAKKLPMFEPQRAELSSEERPLLVNLDLALYRAKVLARNYQFEEAEKILQKCIYYWPEDGRPYVALGKILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRHVAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLALLEAKANRHEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNHTARQLFEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLSRVLFRRASELDPRHQPVWIAWGWMEWKEGNIATAREMYQRALSIDSTTESAARCLQAWGVLEERAGNLSAARRLFRSSLNINSQSYITWMTWASFEENQGNAVRAEEIRDLYFQQEPNK* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0088 522 MobiDBLite consensus disorder prediction 46 75 - -
Vvi5g0088 522 Gene3D Tetratricopeptide repeat domain 390 522 IPR011990 GO:0005515
Vvi5g0088 522 Gene3D Tetratricopeptide repeat domain 160 389 IPR011990 GO:0005515
Vvi5g0088 522 SMART hat_new_1 262 294 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 469 501 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 296 328 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 193 226 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 228 260 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 398 430 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 330 362 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 432 467 IPR003107 GO:0006396
Vvi5g0088 522 SMART hat_new_1 364 396 IPR003107 GO:0006396
Vvi5g0088 522 Pfam Tetratricopeptide repeat 318 357 - -
Vvi5g0088 522 SUPERFAMILY TPR-like 160 398 IPR011990 GO:0005515
Vvi5g0088 522 Pfam Tetratricopeptide repeat 227 272 - -
Vvi5g0088 522 Pfam Tetratricopeptide repeat 426 482 - -
Vvi5g0088 522 SMART tpr_5 214 247 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 418 451 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 455 488 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 145 178 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 384 417 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 282 315 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 248 281 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 316 349 IPR019734 GO:0005515
Vvi5g0088 522 SMART tpr_5 179 212 IPR019734 GO:0005515
Vvi5g0088 522 FunFam Uncharacterized protein 128 388 - -
Vvi5g0088 522 SUPERFAMILY TPR-like 403 520 IPR011990 GO:0005515
Vvi5g0088 522 MobiDBLite consensus disorder prediction 42 109 - -
Vvi5g0088 522 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 7 518 IPR044624 GO:0003729|GO:0006397
Vvi5g0088 522 MobiDBLite consensus disorder prediction 1 30 - -
Vvi5g0088 522 MobiDBLite consensus disorder prediction 7 30 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0088 - - vvi:100263733 1010.75