Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0082 ATGGCTACTGGACAACTATTTTCCCGGACTACACAAGCATTATTCTACAATTACAAACAACTTCCCATCCAGCGGATGCTTGATTTTGACTTCCTTTGTGGAAGGGAGACACCTTCAGTTGCTGGAATTATTAACCCTGGTTCTGAGGGGTTCCAGAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTACATTCATCCATTGAAGCAGCTAGTGCAGCACATCCTACTGCTGATGTTTTTATAAACTTTGCATCATTTAGAAGTGCTGCTGCTTCATCCATGGCTGCTCTGAAACAGCCTACCATTAGAGTTGTGGCTATTATTGCTGAAGGTGTTCCAGAGGCAGACACCAAGCAGTTAATCGCATATGCACGGTCAAACAATAAGGTTGTTATTGGCCCCGCTACTGTTGGTGGTATTCAAGCTGGAGCCTTTAAGATAGGGGACACTGCAGGAACAATTGATAATATCATTCAGTCCAAACTTTACAGGCCTGGCTCTGTTGGTTTTGTTTCTAAATCTGGTGGCATGTCTAATGAACTATATAATACGATTGCCCGTGTCACAGATGGTATCTATGAAGGTATTGCAATTGGAGGAGATGTGTTCCCAGGATCTACTCTTTCTGATCATGTTTTGCGGTTTAACAACATCCCACAGGTTAAAATGGTGGTTGTACTTGGGGAACTTGGTGGGCGAGATGAATACTCCCTAGTTGAAGCCCTGAAACAGGGAAAGATTAATAAACCAGTTGTTGCTTGGGTCAGCGGAACTTGTGCACGGCTCTTTAAATCAGAAGTGCAATTTGGTCATGCGGGGGCCAAAAGTGGTGGTGAAATGGAGTCTGCACAGGCAAAGAATCAAGCACTAAGTGAAGCTGGTGCTGTTGTGCCCACTTCATATGAAGCATTTGAAACTGCAATTAAGGAAACATTTGAGAAACTGCATGAAGAGGGAAAGATTACTCCTGTGAAGGAAGTAGCGCCCCCGCAAATCCCTGAGGATCTTAACACTGCAATTAAGAGTGGAAAAGTTCGTGCTCCAACTCATATTATTTCTACCATCTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCAATGTCCTCTATTGTTGAGCAAGGTTATGGTGTGGGCGACGTTATCTCTCTCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTGTCTCAGGCTTGCTTACAATTGGTCCCCGATTTGGTGGAGCTATTGATGATGCTGCTCGATACTTCAAGGACGCTTATGATAGGGGTCTTACGGCTTATGAGTTTGTTGAGGACATGAAGAAGAAGGGCATTCGCGTGCCTGGCATTGGACACAGGATCAAGAGAGGAGACAACAGAGACAAGAGAGTCGAACTTCTCCAACGATTTGCACGCACTCATTTCCCCTCTGTGAAGTACATGGAGTATGCTGTTGAAGTTGAAACATATACCCTCTCAAAGTCAAACAACCTGGTCCTTAATGTAGATGGTGCTATTGGATCCCTCTTCTTGGATCTCCTTGCTGGCAGTGGAATGTTCACCAAGCAAGAGATTGACGAGATAGTCCAGATTGGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGA 1827 0.4516 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSSIEAASAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQSKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMVVVLGELGGRDEYSLVEALKQGKINKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALSEAGAVVPTSYEAFETAIKETFEKLHEEGKITPVKEVAPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTHFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTAYEFVEDMKKKGIRVPGIGHRIKRGDNRDKRVELLQRFARTHFPSVKYMEYAVEVETYTLSKSNNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0082 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Vvi5g0082 608 Gene3D - 138 323 IPR016102 -
Vvi5g0082 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0006099|GO:0046912
Vvi5g0082 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Vvi5g0082 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Vvi5g0082 608 Gene3D - 2 137 - -
Vvi5g0082 608 PANTHER ATP-CITRATE SYNTHASE 5 607 IPR002020 GO:0006099|GO:0046912
Vvi5g0082 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Vvi5g0082 608 Gene3D - 451 552 IPR016143 -
Vvi5g0082 608 FunFam ATP-citrate synthase subunit 1 455 548 - -
Vvi5g0082 608 FunFam ATP-citrate synthase subunit 138 323 - -
Vvi5g0082 608 CDD CCL_ACL-C 369 606 - -
Vvi5g0082 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Vvi5g0082 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Vvi5g0082 608 Pfam CoA binding domain 21 113 IPR003781 -
Vvi5g0082 608 FunFam ATP-citrate synthase beta chain protein 2 137 - -
Vvi5g0082 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0082 1 608 Acyl Lipid Metabolism Gene Families AT5G49460 93.421 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0082 K01648 - vvi:100267071 1191.41