Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0075 ATGGGTGCTCTCTCAAATAGAAAAATCACACTCAGGATTCTATTTCCAATATCCACTTTCCTGGTCTTCTTGTTAAGTCCTTGTTTGGCAGGGAATGTTCCTGCAAATTTCGTTTTTGGGGATTCTTTGGTGGATGCGGGAAACAACAATTACATTGTATCTCTTTCCAAGGCCAATTACATACCAAATGGGATTGATTTTGGGAAGCCAACAGGAAGATACACAAATGGAAGGACAATAGTGGACATTATAGGCGAGCTCTGTTCCTTTCTTCTTTCACTTCTGCTTGATTCTATCTGTCATAGATTTTTTGAACTAATGGGAATGCTCATATCATTTGTTCTTCTTCTTCTAAATTTTCACCCACCAGGTCAGAAAGTGGGCTTCAAAGATTTCACTCCTCCTTACTTGGCTCCAACCACAGTTGGAGATGTTGTCCTCAAGGGTGTCAACTATGCTTCTGGTGGAGGAGGAATTCTTAATTACACTGGGAAGATCTTTGGTGGAAGAATCAACTTGGATGCACAGCTTGACAACTTTGCAAACACAAGGCAAGACATAATCTCAAGAATTGGTGCACCTGCAGCTCTGAAGCTGTTCCAAAGGTCTCTGTTCTCAGTTACAATAGGCTCCAATGACTTCATCAATAACTATCTGACACCTATCCTCTCAGCAGCTGAGCAGAAGCTGGTCTCTCCACAAACCTTTGTGGGCACCATGATTTCAAGATTCAGGCTTCAACTTACAAGACTCTACAGTTTGGGGGCGAGACGGATCATTGTGGCAAATGTTGGACCGATTGGGTGTATCCCATATCAGAGGGATACAACCCCAGGTGTAGGAGACGACTGTGCTTCCCTTCCGAACCAGATGGCCCAGTTGTTCAATACGCGGTTGAAGAGCCTAGTAGCAGAGCTCAGCACAAGTCTTGAAGGCTCAAAATTCGTGTATGCAGATGTGTACAACATTGTGGACGATATCATCCAGAATTATGAATCATTTGGTTTTGAGAATGCAAATTCGTCGTGTTGCTACATTGCTGGGCGCTTTGGGGGTCTAATCCCATGTGGGCCTCCGTCTAAAGTTTGTTCAGACAGATCAAAGTATGTGTTCTGGGATCCATACCATCCTTCTGATGCTGCTAATGAAATCATGGCCACTCGGCTACTAGGAGGCGACTCTGATGACATTTGGCCAATGAATATTCGCCAACTGATTCAATCCTAG 1227 0.4385 MGALSNRKITLRILFPISTFLVFLLSPCLAGNVPANFVFGDSLVDAGNNNYIVSLSKANYIPNGIDFGKPTGRYTNGRTIVDIIGELCSFLLSLLLDSICHRFFELMGMLISFVLLLLNFHPPGQKVGFKDFTPPYLAPTTVGDVVLKGVNYASGGGGILNYTGKIFGGRINLDAQLDNFANTRQDIISRIGAPAALKLFQRSLFSVTIGSNDFINNYLTPILSAAEQKLVSPQTFVGTMISRFRLQLTRLYSLGARRIIVANVGPIGCIPYQRDTTPGVGDDCASLPNQMAQLFNTRLKSLVAELSTSLEGSKFVYADVYNIVDDIIQNYESFGFENANSSCCYIAGRFGGLIPCGPPSKVCSDRSKYVFWDPYHPSDAANEIMATRLLGGDSDDIWPMNIRQLIQS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0075 408 Pfam GDSL-like Lipase/Acylhydrolase 37 388 IPR001087 GO:0016788
Vvi5g0075 408 CDD SGNH_plant_lipase_like 34 393 IPR035669 -
Vvi5g0075 408 Gene3D SGNH hydrolase 29 391 IPR036514 -
Vvi5g0075 408 SUPERFAMILY SGNH hydrolase 151 390 - -
Vvi5g0075 408 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 31 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0075 Vvi-Chr5 673094 674819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0075 33 408 Acyl Lipid Metabolism Gene Families AT4G10950 33.245 9.35e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0075 - - vvi:100251646 723.391