Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0073 ATGGATCCAAATGGAGAGATAGTGGAGGAGGCGGAGGAGGACAACGGGTTTAGGCGATTCGACGTCGTTTCGGACGACTCCGACCACCACTACGTCAAACTCAACCGGACTGCGAACAGCGACGCCGACTGCTTCAGTAACGCAGCGAGTGGCGTTTACTCTAAGATCATGCAGGAGTGGAAGATTCTCGAGAAGAATCTTCCCGATTCGATTTTCGTGCGGGTCTATGAACGGAGGATCGACCTTCTCCGGGCGGTGATCGTCGGCGCCGTGGGGACGCCGTATCACGATGGTCTCTTCGCCTTCGATCTCGCTTTTCCGCCTGATTACCCCGCGCATCCTCCGCAAGTCCATTACCGCTCATTCGGGCTTCGATTGAACCCCAATCTGTATGCAAATGGGCGGGTTTGTTTGAGTCTGCTGAACACATGGGTGGGGAGGAAGAAGGAGAAGTGGGATCCTTCCCAGTCCACGGTTCTTCAGGTCTTGGTTTCGCTCCAAGGCCTCGTTCTCAACGAGAAGCCCTACTTCAACGAACCGGGTCACGGGGTTCTACCCGGTCGGAGTCTGTGGGAAAAGAATTCCATGGCTTACAGTGAAACTGTGTTTGCCTTGTCTTGCAAGACGATGCTTTTCATGCTCCGAAAACCCCCCAAAAACTTCGAAGCTTTGATCGCAGCGCATTTTCGCGACCGCGCGCTCTTTATATTGGAAGCTTGCAACGCCTATACCGATGGGCGCGTCAAAGTTGGGTACTACAGAGGCGATGGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGACCGTCCACGTCTCGCATACTTTTAAGACTTCGATGCAAAAGGTGTTTCCTGATCTCGTTCACACATTTACTAGAAACGGGGCCTCTCTGGGGAATTTCGTCGAACAGGTAAAGCAGGATAGAAAAAAGGCGTCATCACAAACTCAAGCCGCTGTTCACAAGAAACAGGGTATTGCAATTAAGTTTATAAGCAAATTGAAGATGATTTTGGGGTTGAAGAAGAGTAGGAAGAGCAATGGTGTCGTGGGATCAACCGCAAATAATAGAACAGAAATAGAGGGGTAG 1089 0.5087 MDPNGEIVEEAEEDNGFRRFDVVSDDSDHHYVKLNRTANSDADCFSNAASGVYSKIMQEWKILEKNLPDSIFVRVYERRIDLLRAVIVGAVGTPYHDGLFAFDLAFPPDYPAHPPQVHYRSFGLRLNPNLYANGRVCLSLLNTWVGRKKEKWDPSQSTVLQVLVSLQGLVLNEKPYFNEPGHGVLPGRSLWEKNSMAYSETVFALSCKTMLFMLRKPPKNFEALIAAHFRDRALFILEACNAYTDGRVKVGYYRGDGSSSSSSSSSSSTVHVSHTFKTSMQKVFPDLVHTFTRNGASLGNFVEQVKQDRKKASSQTQAAVHKKQGIAIKFISKLKMILGLKKSRKSNGVVGSTANNRTEIEG* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0073 362 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 51 211 IPR000608 -
Vvi5g0073 362 SUPERFAMILY UBC-like 46 218 IPR016135 -
Vvi5g0073 362 Gene3D Ubiquitin Conjugating Enzyme 5 296 IPR016135 -
Vvi5g0073 362 FunFam Putative ubiquitin-conjugating enzyme E2 38 5 294 - -
Vvi5g0073 362 Pfam Ubiquitin-conjugating enzyme 56 200 IPR000608 -
Vvi5g0073 362 SMART ubc_7 54 211 - -
Vvi5g0073 362 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 11 296 - -
Vvi5g0073 362 CDD UBCc 56 202 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0073 Vvi-Chr5 662379 663467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0073 7 295 Miscellaneous Gene Families AT2G33770 49.481 5.43e-85 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0073 K10581 - vvi:100241396 686.026