Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0072 ATGGCGCCTCCTAACTTGTTCACTGAGATTCATTCCCATAATTCTCTCAAAGAGGGTGTTTCCACTTCGAGATTTTCTTTGTCCCCAAAAGGAGAAATCTCTGTAGATGGGGTGACCCTTTTGTCTGACGTTCCAAACAACGTGAAACTTTCTGCTTTCTCTTCCATTCCTCATTTCTCCGATGATGATGATTCAAAACCACCAGATTACATGCTGAAGTCCGTTTTATCCAAATCCGAAAACGGAGCCTTCCTCGGATTATCCGTGAGGGAGCCCCAGGATCGAATCCTCAACCCCATTGGGAAGCTCTTGAATCGGAAGTTCATGAGTATTTTCCGGTTCAAGACGTGGTGGTCGACCATGTGGATTGGTTCAAATGGCTCCGATCTGCAAATGGAGACCCAGGTGATTCTTCTGCAAGTTCCAGAGTTCAACTCTTACGCCCTCATTCTTCCTCTCATAGAAGGGAGTTTCCGGTCGGCTATTCACCCCGGTCCTGCCGGAGAAGTGGTGTTGTGCGTAGAGAGTGGCTCCACCAAAGTTAAGGGCAGTTCTTTCAGTTCTTGTGCTTATTTTCACGTCGGAGACAACCCTTACGATCTTTTCAGGGACGCTTTCGCCGCCGTTCGTGTTCATTTGGGGACTTTCCGGCTCTTGGAGGAGAAAACTCCGCCGCGGATTATCGATAAATTCGGGTGGTGCTCGTGGGATGCTTTTTATCTCACGGTGGAGCCGGTCGGAGTGTGGCATGGTGTTAAGAGCTTCCAAGAAAATGGGTTTCCTCCCAGGTTTCTGATCATCGACGATGGATGGCAGAGCATAAACATGGACCACGAGCCCCCTCTACAGGACTCCAAAGATCTAACGGGCCTCGGCTCACAGATGCTCTGCAGGCTCTACAGATTCAAGGAGAACGAGAAATTCGCAAAGTACCAAGCGGGCGCAATGCTAAAACTCCACTCTCCGAAATTCAGTCAGGAGGAGCACGACAGGCGATTCAAAGAGATGGTTGCTCTCGCCATGAAGAAGAAGGCCATCAAGGAGGAAGGGGGCGATGACTCGGGCCTTCCAGAGGCCACCATCATAGAGTACCTCAAGGAAGAAAAGGGGGTGAAGAGAGGGGGGCTGAAGGCACTTGTGAATGATTTGAAGGCAAAGTTTTCAGGGTTGGATGATGTTTATGTGTGGCATGCTCTGTGTGGAGCTTGGGGAGGGGTGAGGCCAGGGACTACCCACCTGGATAACAAGGTCTGTGAAGCAACCATAGCTGCAGGGCTTGAGAAGACCATGTATGATTTGGCAGTTGTTATGGTGGTTAAAGGTGGGATTGGGCTGGTTAATCCAAGCCAAGCTGGAGATCTATATGAATCCATGCATTCATATCTTGCTGATGCTGGTATCACTGGTGTGAAGGTGGATGTCATCCATGTAAGTTCTTATGTGGGTGAGGAATATGGCGGCAGAGTTGAGCTTGCCAGGGCATACTATGATGGTCTGAGCCAGTCACTGAAGAAAAACTTTGGAGGAAGTGGCTTCATAGCAAGCATGGAGCAGTGCAATGACTTCTTCTTCCTGGCCACAAAGCAAATCTCCATGGGCAGAGTTGGTGATGACTTCTGGTTTGAAGATCCTAATGGAGATCCCATGGGAGTGTACTGGCTGCAAGGAGTCCACATGATCCATTGCAGCTACAACAGCTTATGGCAGGGACAGTTCATACAACCTGACTGGGACATGTTCCAATCCGATCATCTCTGCGCTGAGTTCCATGCCGGTTCAAGAGCAATATGCGGAGGACCGGTGTATGTAAGCGATAAGGTGGGGCACCATAACTTTGATCTTCTGAGAAAGCTAGTGTTGCCTGATGGAACCATACTCAGATGCCAGCACTACGCCCTTCCCACCAGAGATTGCCTCTTTGAAAACCCACTCTTTGATGGCAAGACCCTCCTCAAAATCTGGAACCTAAACAAGTTTTCTGGGGTTGTGGGAGTATTCAACTGCCAAGGAGCTGGATGGTATCCGGAGGAGCACAAGTGTAAGGCCTACCCACAATGCTACAAGGCCATGTCTGGCTCGGTTTCTTCGGATGATGTTGAGTGGGAGCAGAAGGCTTCTACGGCAGAGTTTCGAGGTGCGGATGAGTTTGCTGTCTACCTCAACAAATGTGATAATCTACGGTTGGTGAAGCCTAAAGAGCAGATCAACATCACCCTCCTGCCTTCAACATTTGAAATATTCACCATCTCCCCAGTTCACAAACTTAGAAAGGGATCTAAATTCGCAGGGATAGGCCTTGAGAACATGTTTAACAGTGGAGGGGCAATTGAAGGCATGGAGTGTGGCTGCATAGGAGGGCTTTGTAGTGTGAAGATGAAGGTTAAGGGAGCAGGGAAGTTCTTGGCCTACTCAAGTGAGAAGCCAGGGGAGGTTGTTCTGAATGGGGAAAAGGTGAAGTATGAGTGGACAAGCAATGGAATTCTGAGTTTTGAAGTCCCATGGACTGGTGGGGAATCATCTGATGTTCTCATTCTAATTCACTAA 2544 0.4894 MAPPNLFTEIHSHNSLKEGVSTSRFSLSPKGEISVDGVTLLSDVPNNVKLSAFSSIPHFSDDDDSKPPDYMLKSVLSKSENGAFLGLSVREPQDRILNPIGKLLNRKFMSIFRFKTWWSTMWIGSNGSDLQMETQVILLQVPEFNSYALILPLIEGSFRSAIHPGPAGEVVLCVESGSTKVKGSSFSSCAYFHVGDNPYDLFRDAFAAVRVHLGTFRLLEEKTPPRIIDKFGWCSWDAFYLTVEPVGVWHGVKSFQENGFPPRFLIIDDGWQSINMDHEPPLQDSKDLTGLGSQMLCRLYRFKENEKFAKYQAGAMLKLHSPKFSQEEHDRRFKEMVALAMKKKAIKEEGGDDSGLPEATIIEYLKEEKGVKRGGLKALVNDLKAKFSGLDDVYVWHALCGAWGGVRPGTTHLDNKVCEATIAAGLEKTMYDLAVVMVVKGGIGLVNPSQAGDLYESMHSYLADAGITGVKVDVIHVSSYVGEEYGGRVELARAYYDGLSQSLKKNFGGSGFIASMEQCNDFFFLATKQISMGRVGDDFWFEDPNGDPMGVYWLQGVHMIHCSYNSLWQGQFIQPDWDMFQSDHLCAEFHAGSRAICGGPVYVSDKVGHHNFDLLRKLVLPDGTILRCQHYALPTRDCLFENPLFDGKTLLKIWNLNKFSGVVGVFNCQGAGWYPEEHKCKAYPQCYKAMSGSVSSDDVEWEQKASTAEFRGADEFAVYLNKCDNLRLVKPKEQINITLLPSTFEIFTISPVHKLRKGSKFAGIGLENMFNSGGAIEGMECGCIGGLCSVKMKVKGAGKFLAYSSEKPGEVVLNGEKVKYEWTSNGILSFEVPWTGGESSDVLILIH* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0072 847 SUPERFAMILY (Trans)glycosidases 227 629 IPR017853 -
Vvi5g0072 847 PANTHER - 23 837 IPR008811 -
Vvi5g0072 847 Gene3D Aldolase class I 222 618 IPR013785 -
Vvi5g0072 847 Pfam Raffinose synthase or seed imbibition protein Sip1 32 832 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0072 Vvi-Chr5 658120 661678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0072 25 835 Glycoside Hydrolase AT4G01970 51.074 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0072 K06611 - vvi:100246503 1746.1