LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g0069	ATGTGCCACCTCCCTCATTCTCGTACTTACATTTCGTGTCTATTGTTCTTCAAAACGCGTCGGTTCGATCTCATTTACGAAGCAGCTGCAATGTGTCCCACCGGCAGTTCCCTACCTCAGGCGACTGCGGTGAGGTCTGAGTTCCGCCCGGCATTCGACGTCCTTGACGCCGACCGCGACGGCAAGATCAGCCGCGAAGATCTCCGCAGCTTTTACGCGGGATTCCCAGGCGGCGTCTCCGGAGATGAGGAGGCGATCGGGTCCATGATGTCGGTGGCGGATTCGAATAAGGATGGGTTCGTGGAGTACGATGAGTTTGAACGCGTGTTGGGCTGCCGGAGAAGTCCGAGGAACAAGGGCCACGGCGTCGCTGGGGTGATGGAGGATGTGTTTAAGGTTATGGACAGGGACGGCGACGGCAAAGTAGGGCTCGAGGATTTGAAGAGCTATATGAATTGGGCCGGGTTTTCTGCAACTGAGGAAGATATCAAGGCCATGATCAAATTGGGCGGCGGTGATGAAGATAGTGGTGTATCCTATGATGGTCTGCTCAAGATCCTGGCCGTTGATTATATTAACTAA	582	0.543	MCHLPHSRTYISCLLFFKTRRFDLIYEAAAMCPTGSSLPQATAVRSEFRPAFDVLDADRDGKISREDLRSFYAGFPGGVSGDEEAIGSMMSVADSNKDGFVEYDEFERVLGCRRSPRNKGHGVAGVMEDVFKVMDRDGDGKVGLEDLKSYMNWAGFSATEEDIKAMIKLGGGDEDSGVSYDGLLKILAVDYIN*	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g0069	193	ProSiteProfiles	EF-hand calcium-binding domain profile.	122	157	IPR002048	GO:0005509
	Vvi5g0069	193	SMART	efh_1	47	75	IPR002048	GO:0005509
	Vvi5g0069	193	SMART	efh_1	85	113	IPR002048	GO:0005509
	Vvi5g0069	193	SMART	efh_1	126	154	IPR002048	GO:0005509
	Vvi5g0069	193	ProSitePatterns	EF-hand calcium-binding domain.	56	68	IPR018247	-
	Vvi5g0069	193	CDD	EFh	47	106	IPR002048	GO:0005509
	Vvi5g0069	193	SUPERFAMILY	EF-hand	45	187	IPR011992	-
	Vvi5g0069	193	CDD	EFh	128	188	IPR002048	GO:0005509
	Vvi5g0069	193	Gene3D	-	36	191	-	-
	Vvi5g0069	193	PANTHER	CALCIUM BINDING PROTEIN	45	109	-	-
	Vvi5g0069	193	PRINTS	Parvalbumin signature	94	110	-	-
	Vvi5g0069	193	PRINTS	Parvalbumin signature	134	147	-	-
	Vvi5g0069	193	ProSiteProfiles	EF-hand calcium-binding domain profile.	81	116	IPR002048	GO:0005509
	Vvi5g0069	193	Pfam	EF-hand domain pair	47	108	IPR002048	GO:0005509
	Vvi5g0069	193	ProSitePatterns	EF-hand calcium-binding domain.	135	147	IPR018247	-
	Vvi5g0069	193	ProSitePatterns	EF-hand calcium-binding domain.	94	106	IPR018247	-
	Vvi5g0069	193	Pfam	EF hand	127	148	IPR002048	GO:0005509
	Vvi5g0069	193	ProSiteProfiles	EF-hand calcium-binding domain profile.	43	78	IPR002048	GO:0005509
	Vvi5g0069	193	FunFam	Calcium-binding protein CP1	41	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g0069	Vvi-Chr5	610552	611133	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g0069	31	188	EF-hand Containing Proteins	AT5G49480	56.604	1.64e-60	184

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g0069	K02183		-	vvi:100263658	331.643