Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0054 ATGCTGATCTGGCAGTTATCGAATTCCGAAAAGGTTGAGCATTTTCTTATATCGTTTTCCATAATCCCGGAAACAACCGATTTTCACCATACAGTCCTTTCTGAGTTTCAGAGGCGTCCGAAACCCGGAGATTTGTTCGGCTCGGAATCAATGGCGAAACACGAAGACCTTCCGGTTCCTGTTTTCTCGGCTCTCGAGCCAGTGTACGGAGGCGGATCTCAACTCGAAGAAGCTCAACTGCGATTCGACGGATTGAAATCCAAGTTCGTCGAAGTGTTCGGCCAGGCTCCTGATATTTTCGCTCGATCTCCAGGGAGGGTGAATTTGATAGGAGAGCACATTGATTATGAAGGCTATTCGGTGTTGCCGATGGCAATACGGCAGGACACGATCGTGGCGATTCGGAAGCATGACGCCGGAGAGAGTCCGAAACTTCTTCGAATTGCTAATGTTAGTGATAAGTATACTATGTGTACTTATCCTGCTGATCCCGAGCAGGAAATTGATTTAAAGAATCACAAATGGGGTCATTATTTCATTTGCGGGTACAAAGGTTATTATGAATATGCTAAATTAAAAGGAGTTGATGTTGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTATAATGGCTGCTTATGATGTCAGCTTCCCAAAGAAAGACGTTGCCCAACTAACATGTGAATGTGAGCGACACATTGGAACACAATCTGGTGGTATGGACCAGGCTATCTCTATCATGGCGAAATCTGGGTTTGCAGAACTGATTGATTTCAACCCTGTCCGTGCGACCGATGTGCAACTTCCTGCTGGTGGATCTTTTGTAATAGCTCATTCTTTGGCAGAGTCCCAAAAGGCAGTAACTGCTGCTACAAATTATAATAACCGGGTTGTTGAATGTCGGCTAGCTGCTATTGTTCTTGGTATAAAGCTTGGAATGAAACCACAACAAGCAATTGCAGAGGTGAAAACTCTTTCTGATGTTGAGGGATTGTGTGTATCATTTGCAAGTGATCATGGCTCTTCCGATCCTGTCGTAGCTGTCAAGGAATTTTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAGAAAATCATTGAGGAAAGTCTGCCATCAGTCTTTGGCAATTCGCCAACCTCTTTGGATGTGTTAAAAGCTGCCAAGCATTTTAAATTATTTCAGAGAGCCTCCCATGTATACTCTGAGGCCAGGCGTGTTCATGCTTTCAGGGACACTGTGTTGTCAGGGTTAAGTGAGGAAGACATGCTAAAGAAGCTCGGTGACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTTGGAGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCAGTTGCCTTGGTGAAAGAGAGCATTGTCCCACAATTCATTCTAAATTTGAAGGATCAATTCTACCAATCAAGGATTGAGAAGGGCGTGATCAACAAGAATGACCTTGGCCTGTATATATTCGCTTCAAAGCCATCTAGTGGTGCTGCCATCTTCAAGTTTTAG 1650 0.4479 MLIWQLSNSEKVEHFLISFSIIPETTDFHHTVLSEFQRRPKPGDLFGSESMAKHEDLPVPVFSALEPVYGGGSQLEEAQLRFDGLKSKFVEVFGQAPDIFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDAGESPKLLRIANVSDKYTMCTYPADPEQEIDLKNHKWGHYFICGYKGYYEYAKLKGVDVGVPVGLDVLIDGTVPTGSGLSSSAAFVCSSMIAIMAAYDVSFPKKDVAQLTCECERHIGTQSGGMDQAISIMAKSGFAELIDFNPVRATDVQLPAGGSFVIAHSLAESQKAVTAATNYNNRVVECRLAAIVLGIKLGMKPQQAIAEVKTLSDVEGLCVSFASDHGSSDPVVAVKEFLKEEPYTAEEIEKIIEESLPSVFGNSPTSLDVLKAAKHFKLFQRASHVYSEARRVHAFRDTVLSGLSEEDMLKKLGDLMNKSHDSCSVLYECSCPELEELVKICRDNGALGARLTGAGWGGCAVALVKESIVPQFILNLKDQFYQSRIEKGVINKNDLGLYIFASKPSSGAAIFKF* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0054 549 PRINTS Mevalonate kinase family signature 103 127 - -
Vvi5g0054 549 PRINTS Mevalonate kinase family signature 251 270 - -
Vvi5g0054 549 PRINTS Mevalonate kinase family signature 484 501 - -
Vvi5g0054 549 PRINTS Mevalonate kinase family signature 209 231 - -
Vvi5g0054 549 FunFam galactokinase-like isoform X1 87 288 - -
Vvi5g0054 549 NCBIfam galactokinase 85 519 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Vvi5g0054 549 ProSitePatterns GHMP kinases putative ATP-binding domain. 211 222 IPR006203 GO:0005524
Vvi5g0054 549 Gene3D - 314 464 - -
Vvi5g0054 549 SUPERFAMILY GHMP Kinase, C-terminal domain 295 525 IPR036554 -
Vvi5g0054 549 Gene3D - 87 288 IPR014721 -
Vvi5g0054 549 PRINTS Galactokinase signature 202 220 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Vvi5g0054 549 PRINTS Galactokinase signature 416 430 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Vvi5g0054 549 PRINTS Galactokinase signature 105 123 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Vvi5g0054 549 FunFam Galactokinase 314 464 - -
Vvi5g0054 549 ProSitePatterns Galactokinase signature. 105 116 IPR019741 -
Vvi5g0054 549 Pfam Galactokinase galactose-binding signature 88 136 IPR019539 -
Vvi5g0054 549 Pfam GHMP kinases C terminal 445 517 IPR013750 -
Vvi5g0054 549 PANTHER MEVALONATE KINASE/GALACTOKINASE 57 545 - -
Vvi5g0054 549 Pfam GHMP kinases N terminal domain 204 269 IPR006204 GO:0005524
Vvi5g0054 549 PIRSF Galactokinase 73 549 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Vvi5g0054 549 SUPERFAMILY Ribosomal protein S5 domain 2-like 77 292 IPR020568 -
Vvi5g0054 549 Gene3D - 289 518 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0054 K18674 - vvi:100244839 975.311