Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g0048 | ATGAAGACTTCCATCTCTCTACCAATATTCATCTTTCTTCTTTATACCCTTCTTCTCTCATTCACCCACTGCTCCGTCTTGGCTCACAAGAACACCCCCTTCGTAGACAAAATCTGCAAGCAGACCCCTTATCATGCTCTCTGCCTCAAGACTCTCCTCTCAGACCCTCGCAGTGCCGGAGCTGATGTGAGAGGCCTCGCCATTATTATGGTGGATGTGATAAAGAGGGACACGGTCAGCATCCTGAGCCGCATCAATGAGCTGCTGAAGAAGGGCGGCACAGACCCGCATACACGCGGCGCCTTGCTTGATTGTATTGATAAGTATAACGCAGTGCTGAAGGGTGACGTCCCGGAAGCCATGGAAGCTTTGGAGAAAGGTGATTACAAGTTTGCAGAGCAAGGTGCAACAGACGCTTCATTAGAGGCCAGGGTATGTGAAGAGAATTTTGAGACTTCGCCCATAACTAATATGAACAAACTGGTCCACCATGTTTCTCTTGTGGCTGCCTCCATTGTCAGGATGTTGTTATAA | 534 | 0.4869 | MKTSISLPIFIFLLYTLLLSFTHCSVLAHKNTPFVDKICKQTPYHALCLKTLLSDPRSAGADVRGLAIIMVDVIKRDTVSILSRINELLKKGGTDPHTRGALLDCIDKYNAVLKGDVPEAMEALEKGDYKFAEQGATDASLEARVCEENFETSPITNMNKLVHHVSLVAASIVRMLL* | 178 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g0048 | 177 | CDD | CIF_like | 35 | 176 | IPR034087 | GO:0004857|GO:0043086 | |
| Vvi5g0048 | 177 | FunFam | Invertase/pectin methylesterase inhibitor family protein | 30 | 177 | - | - | |
| Vvi5g0048 | 177 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 177 | IPR035513 | - | |
| Vvi5g0048 | 177 | NCBIfam | pectinesterase inhibitor domain | 9 | 176 | IPR006501 | GO:0004857 | |
| Vvi5g0048 | 177 | SMART | PMEI_2 | 30 | 172 | IPR006501 | GO:0004857 | |
| Vvi5g0048 | 177 | Pfam | Plant invertase/pectin methylesterase inhibitor | 34 | 169 | IPR006501 | GO:0004857 | |
| Vvi5g0048 | 177 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 176 | IPR035513 | - | |
| Vvi5g0048 | 177 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 7 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi5g0048 | Vvi-Chr5 | 474053 | 474586 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g0048 | - | - | vvi:100246590 | 351.288 |