Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0047 ATGGCACATGCTCACCGGAGTCAGAACAGTGTTGCTCTGGTTCATTCACAGCCGTTGATACATCCTCAACCTCCAGTCGTGAACGCTCCGGTCGGCTTTGTTCCGAGACCGGTCGGCGTGATAAACCCTAGCTTCGGTCCTGTGCCGCCTTTTGATCCCGCGAGTTTACCGCAACCTGGATTTGTTTTGAATCCGGCGGTGTTGGTCCGAATGGAACATCGCAGGTCAATCTCGCTGCTTCAGTTTATGTCAAACGAAGGGCTCATTCCGTCCCCAGAGGAGGAGTTGAAGAGGAAAAATGTAATTGAGAAGCTCAAAGAGATAGTGTTGACATGGGTTAAGAGGGTTGCTTGGCAACGTCAACGCCCAAAACAACAAATTGCAGTTACTTCTGCAACGATTTTAACTTATGGCTCGTATGGCCTTGGAGTTCATGGGCCAGAATCAGACATTGATGCTCTATGTGTTGGCCCTTTCTTTGCTTCCATGGCTGATGATTTTTTTATTGTTCTGCGCAACATGCTTGAAAGTAGACCAGAAGTCTCAGAGATCCATTGTGTCAAAGATGCCAAAGTTCCTCTAATGCGGTTCAAATTTGATGGAATATCCGTTGATCTTCCATATGCTCAGCTTAAACTATTATATGTTCCTGAAAATTTGAATGTACTCAACCCATATTTTCTAAGGAATATCGACGAAACAAGTTGGAAAAGCTTGTCCGGAGTACGAGCCAATGAATGCATTCTTCAGCTTGTTCCAAATGTGGAGAATTTTCAATCAATACTTCGATGTATTAAATTATGGGCGAAAAGGCGAGGGGTGTATGGTAACTTATTTGGGTATTTTGGTGGAGTCCATTTGGCCATTCTTGCTGCTTTTGTTTGTCAAAAGAATCCACATGCCAACTTAAATGTTCTAATGTCAAGCTTTTTTAAGACTTTCTCCGGCTGGCCTTGGCCTACACCAGTAGCATTGGAAGATGGAAGACTACCAACTGGAGGCACCAGAGAAACACGTGCATTAATGCCCATTCAATTACCATGTAGCCCTTATGGATATTGCCATTCAAACATCACGAAAAGCACATTTTACAGGATCACGACAGAGCTTACCCTAGGGCATGCTCTGACTCGGGATCTCCTAAGGCTAGACTTTGACTGGAATGACATATTTGAGCCTTTTTGTTACTCCAAGAAATATTCGCGATTTATAAAAATTTACCTGTCGTCTTCTAATCAAGATGAATTAGGGGATTGGGTGGGTTGGGTAAAGTCACGCTTTCGCTTCCTTCTTGCAAAGGTGGAGGAGGTACAGGGTCTGTGTGACCCCAACCCAACAGAGTTCATTGATCCTGATGCAGGAGGGCCAAATGTTGTGTTTTTCTGGGGCGTACAACCTGGTAGGATAAATTTTTCGGACATAGATGTTGTGGAGGATGACTTCATGCAAAACATTAATAACGGTGGCTATCAAGGCCCTCCTGGAAAGATGAATTTGTCTGTCATTCCTACTTCTCAGCTGCCTGGTTATGCTCAGCTGGATACTGGAAGTAGGAACAGGACAAAAGCATGCTGGAGGATGTTTAATTATCATCAACCAAGGGTCCCGGTGTTCTCGCAGCATCTGCCTCTGTACTTTGTAGGGTATGCAGCAACCGATAAGGATGCTAAGCGCCTGGATGCTTGGAGCTAG 1692 0.4474 MAHAHRSQNSVALVHSQPLIHPQPPVVNAPVGFVPRPVGVINPSFGPVPPFDPASLPQPGFVLNPAVLVRMEHRRSISLLQFMSNEGLIPSPEEELKRKNVIEKLKEIVLTWVKRVAWQRQRPKQQIAVTSATILTYGSYGLGVHGPESDIDALCVGPFFASMADDFFIVLRNMLESRPEVSEIHCVKDAKVPLMRFKFDGISVDLPYAQLKLLYVPENLNVLNPYFLRNIDETSWKSLSGVRANECILQLVPNVENFQSILRCIKLWAKRRGVYGNLFGYFGGVHLAILAAFVCQKNPHANLNVLMSSFFKTFSGWPWPTPVALEDGRLPTGGTRETRALMPIQLPCSPYGYCHSNITKSTFYRITTELTLGHALTRDLLRLDFDWNDIFEPFCYSKKYSRFIKIYLSSSNQDELGDWVGWVKSRFRFLLAKVEEVQGLCDPNPTEFIDPDAGGPNVVFFWGVQPGRINFSDIDVVEDDFMQNINNGGYQGPPGKMNLSVIPTSQLPGYAQLDTGSRNRTKACWRMFNYHQPRVPVFSQHLPLYFVGYAATDKDAKRLDAWS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0047 563 Gene3D - 71 391 - -
Vvi5g0047 563 Gene3D Beta Polymerase, domain 2 90 246 IPR043519 -
Vvi5g0047 563 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 396 510 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vvi5g0047 563 FunFam Poly(A) polymerase alpha, putative 90 246 - -
Vvi5g0047 563 SUPERFAMILY Nucleotidyltransferase 63 249 IPR043519 -
Vvi5g0047 563 Gene3D Poly(A) polymerase predicted RNA binding domain 396 500 - -
Vvi5g0047 563 SUPERFAMILY PAP/OAS1 substrate-binding domain 253 393 - -
Vvi5g0047 563 PANTHER POLY A POLYMERASE 69 522 - -
Vvi5g0047 563 FunFam Nuclear poly(A) polymerase 3 396 502 - -
Vvi5g0047 563 Pfam Nucleotidyltransferase domain 131 168 IPR002934 GO:0016779
Vvi5g0047 563 CDD NT_PAP_TUTase 97 211 - -
Vvi5g0047 563 Pfam Poly(A) polymerase predicted RNA binding domain 398 440 IPR007010 GO:0003723|GO:0043631
Vvi5g0047 563 Pfam Poly(A) polymerase central domain 72 393 IPR007012 GO:0043631|GO:1990817
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0047 Vvi-Chr5 455427 464524 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0047 K14376 - vvi:100267147 1169.84