Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0043 ATGATGATTGTCGGTCCGATAACTCCAGGCCAGGTGGCGTTTTTCATCGGATTTGTGTCCGTATTCGCTGCATGGATTTATGCTGAGTTTTTGGAGTATAAGAAGAATGCGTTCCCTTCCAAAACGCATTCGGATCTCAATTTGGTTGAGTTAAATGAAACAGTTAAAGAAGATGACAGAGCTGTTTTACTTGAGGGGGGTGGTCTCCAGTCAGTTTCTCCTAAAGCCCGGAGCTCATCTGTCACATCTCACATCTTCAGATTCCTTCTAATGGAAGAGTCTTTCTTGATTGAATACCGATTGACACTGAGAGCCATGTGTGAATTTGGGGCTCTTTTGGCCTACTTTTACTTATGTGATCGTACAAATCTCTTTGGTGACTCCAAAAAGAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTGGGAAATCAATACTTTATCTGAACAGGCATCAAACTGAGGAGTGGAAAGGCTGGATGCAGGTATTATTTTTGATGTATCATTACTTTGCGGCAACAGAAATCTATAATGCCATCCGCCTTTTTATTGCTGCATATGTGTGGATGACTGGATTTGGGAATTTCTCATACTATTATGTGCGCAAAGATTTTAGCCTTGCAAGGTTTGCTCAGATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTCTTATGGTTTATGGGGCACTTGGTATTCTAAACAAATATAATGAGATAGGGTTGGTCATAGCTGTGAAAATTGTCGCTTGCTTTTTGGTGGTTGTTCTGTTATGGGAAATTCCTGGAGTGTTTGAATTTGTATGGAGCCCACTTACTTTCATACTAGGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTATTATCATCCTACTGTGGAGAGGTGGATGGAGAAACTGGAGGAAACAGAAGTGAAACTTAGAGTAGCAATCAAAATGGCTATTGCAACAGTAGCCTTAACGGTGGGATATCTGTGGTTCGAGCATATATACAAGCTGGACAAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAGCGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTTGACCCTTTTTGCATGGCTTGGAAAGATAACACTGGAGACTTACATCTCCCAGATCCATATATGGTTAAGATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAATATCTTACAGACTCTTTGAGCTGACAAATACTTTGAAAGTTGCATTCGTGCCCAGCAAAGACAACAAGCTCCTTATGCACAACATCATTGCAGGAATAGCGATCTCAGGCATCTTATACACGTTGTCATTCATATTCCTGCAAGTCCCCCAGCTGTTGGTGTGA 1635 0.4061 MMIVGPITPGQVAFFIGFVSVFAAWIYAEFLEYKKNAFPSKTHSDLNLVELNETVKEDDRAVLLEGGGLQSVSPKARSSSVTSHIFRFLLMEESFLIEYRLTLRAMCEFGALLAYFYLCDRTNLFGDSKKSYNRDLFIFLYFLLIIVSAVTSFKVHHDKSSFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRLFIAAYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFLVLFCCVVLNNSYMLYYICPMHTLFTLMVYGALGILNKYNEIGLVIAVKIVACFLVVVLLWEIPGVFEFVWSPLTFILGYTDPDPSKQKFSRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEETEVKLRVAIKMAIATVALTVGYLWFEHIYKLDKLTYNKYHPYTSWIPISVYICLRNLTQQFRCYSLTLFAWLGKITLETYISQIHIWLRSGLPDAQPKLLLSLIPSYPLLNFMLTTSIYIAISYRLFELTNTLKVAFVPSKDNKLLMHNIIAGIAISGILYTLSFIFLQVPQLLV* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0043 544 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 12 526 - -
Vvi5g0043 544 Pfam 10 TM Acyl Transferase domain found in Cas1p 97 516 IPR012419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0043 Vvi-Chr5 431609 437568 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0043 K03377 - vvi:100256882 1084.32