Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0042 ATGGCATCGCACATTTCTCTAACCACCGCCTCCCTCATCGTCTTCCTCGTCCTCCTCCCAATCTCCTATGGAGGCTCTGTGCCGGAATCTGACATAGATCTCGTCGAGTTTCCTTTGAATTTAGAGTTTCTTGAGGCTGAATTCTTTTTGTGGGGATCTCAGGGATATGGGTTAGACACAGTAGCTGCGAATCTCAGCAAGGGAGGTCCACCACCAGTCGGTGCAAGAAAGGCTACTCTCGACCCATTCATCAGAGATGTCATCTACCAATTCGCTCTCCAAGAAATCGGACACCTGAGGGCGATTCAGAGCAAAGTAAAGGGGTTCCCTCGGCCATTGTTGAATCTGAGTGCAGCGTCATTTGCAGATGTCATGAACAGCGCATTTGGCAAGCCTCTGAATCCCCCCTTTGACCCTTACGCCAACGGACTCAACTTCCTTCTCGCATCGTACGTCATTCCGTACGTGGGACTCACTGGATACGTGGGCACAAATCCAAACCTCCAAGGTGCTGCTTCCAAAAGGCTAGTTGCAGGCCTGTTGGGCGTGGAGTCAGGCCAAGATGCAGTGATCCGAGCCCTGCTCTACAGGAAGGCGGCAGCAAAGGTCCACCCATATGGCATAACTGTTGCAGACTTCACGTATCGGATCTCGAACCTGAGGAATAATCTGGGAAAGTCGGGGTTGAAAGACGAAGGGCTTGTGGTGCCTCCAGTTCGCGGCGCCGAGGGAAAAAGTAGGGGGAATGTGCTAGCGGGAGACAAGTTCTCGCTTGCTTATGCTAGAAAGCCAGAGGAGATTCTGAGAATAGTGTATGGGGGAGGTAGCGAACGTAATCCAGGGGGATTCTACCCTCAAGGAGCCAACGGGAGAATTGCTAGGTCTTTTTTACAGAAGTCCAAGGCGTTGAAAATCACTCTTACGCCCCTACCTCTGCCTCACTTTCTATTCCCTTGTAAATATCAATTGAAGTTGAAGAAAAATTCGGGCTCAATCCAAGATAGAGAAAAGAGAGAAGAAGGGAATCGAGCATCACCTTCTTCACCAGGTCAAAAGGAGAAAATGGCTGGACGCAATGATTCAGGTGCATCTGAGAAGAAATCAAATGAGGCCACAAATGATATGCCAACTTTCAATGCCGAGAATTTGCAAAGTAACATGAAAATTATTTATTACAGCCGAACATTTTTGTCCATCATTGGTGGAGTCATTGCTGGAATTTTGGGATTTACTGGCTTCACTGGCTTTATATTTTACTTTCTTGTTATGGCAATTACTTCAGTAGGACTCATGGCCAAGGCAAAGTTTTCTGTGCATTCATACTTTGATTCCTGGAACCGTATCATACTTGATGGCTTCCTTGGTGGGCTTATGTCATTCGTGCTGTTCTGGACGTATCCTTTCCATTAA 1410 0.4766 MASHISLTTASLIVFLVLLPISYGGSVPESDIDLVEFPLNLEFLEAEFFLWGSQGYGLDTVAANLSKGGPPPVGARKATLDPFIRDVIYQFALQEIGHLRAIQSKVKGFPRPLLNLSAASFADVMNSAFGKPLNPPFDPYANGLNFLLASYVIPYVGLTGYVGTNPNLQGAASKRLVAGLLGVESGQDAVIRALLYRKAAAKVHPYGITVADFTYRISNLRNNLGKSGLKDEGLVVPPVRGAEGKSRGNVLAGDKFSLAYARKPEEILRIVYGGGSERNPGGFYPQGANGRIARSFLQKSKALKITLTPLPLPHFLFPCKYQLKLKKNSGSIQDREKREEGNRASPSSPGQKEKMAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFTGFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWTYPFH* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0042 469 MobiDBLite consensus disorder prediction 329 343 - -
Vvi5g0042 469 Pfam EMC6 390 466 IPR029008 -
Vvi5g0042 469 MobiDBLite consensus disorder prediction 328 377 - -
Vvi5g0042 469 Pfam Ferritin-like domain 30 196 - -
Vvi5g0042 469 PANTHER DESICCATION-LIKE PROTEIN 26 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0042 Vvi-Chr5 422205 429531 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0042 - - vvi:100253439 593.578