Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0041 ATGCATTTGAAGGAGGGATGTTCCTTACTTTTAAAAGTTCGCAAACCTTCAATCCCTTTTGTGCTCAGCACGAATCCAGTTCCGAATCTCAAAGCCGAAAATGAAGAAAAATCGTCCGTTCTGAAAGAGGCCGATGTTCTAAAGAGGTTGAAACATGAGCATGATATCACTCTTGCATTAGAGTATTTCAAGTCTATTGCAAATTCGAAATCTTTCAAACACACGCCTCTGACCTACCAAATGATGATTGAGAAGCTCGCTAGTGAACGTGAGATGGATTGTGTTCAGTACCTTTTGCAGCAAATGAAGTTAGAGGGTATTAGTTGCTCTGAGGATCTATTTATTAGTGTGATAGGTTCGTATAGGCGAGCGGGTTCTTCTGAGCAAGCGTTGAAAACGTTTTATAGGATGCAAGATTTCCGTGTTAAACCCACTGTTAAGATTTACAATCACATCTTGGATGCATTGCTTGACGAGAATAGGTTTCAGATGATCAACCCTATATATAGTAATATGAAGAAAGATGGTATGGAGCCCAATGTGTTTACATACAACATTCTTTTGAAAGCATTGTGTAAGAATAATCGGGTGGATGGGGCCCACAAATTACTTGTGGAAATGTCGAGCAAGGGATGTGATCCTGATGAGGTGAGCTATACAACATTGATATCTTCTTTGTGTAAGCTCGGTAAGGTGAAGGAAGCCAGGGAGCTTGCCATGAGTTTCACTCCATCTGTACCTGTTTATAATGCTTTGATAAATGGGGTGTGCAAGGAATACACATTTGAGGAGGCATTTCAGTTATTAGATGAAATGATGAACAAAGGGATTGACCCTAATGTTATTTCATACACAACTATCATCAATGCCCTCTCCGATGCAGGGAATGTTGAGCTGTCTCTTGCTGTTTTAGCCAAAATGTTTGCGAGAGGATGTAGTCCCAATCTTCACACATTTACTTCCTTGATAAAGGGTTTTTTCTTGAAAGGGGGATCACATGAAGCTCTTGACTTTTGGGACCGGATGATAAGGGAAGGAGTTGTGCCCAATGTTGTTGCATATAATGCACTAATGCATGGTTTATGCTCTAAGAGGAGCTTGGGTGATGCTGTATCTGTTTTCAATCAAATGGAGATAAATGGATGCTGTCCAAATGTGAGGACATATAGTGCTCTTATTGATGGCTATGCAAAAGCTGGAGACTTGGATGGTGCATCTGAGGTATGGAACTGGATGATAACTCATGGTTGCCATCCTAATGTTGTGGCTTATACCTGCATGGTGGATGTTCTTTGCAGGAATTCTATGTTTAACCAAGCTTATTGTCTTATAGAGAATATGCAAGTGGAAAATTGTCCTCCAAATACAGTTACATTCAATACATTTATCAAAGGTTTATGTGGAAGTGGAAGAGTAGATTGGGCAATAAAGGTGTTTGATCAAATGGGAAACTCTGGCTGTTTTCCTAATACCACGACCTACAATGAGCTATTGGACAGTCTCTTGAAAGACAGAAGGTTTGGAGAAGCCTTTGGACTTGTTAAGGATATGGAACATAGGGGGATTGAGCTGAATTTAGTGACGTATAATACTATTATATATGGTTATTGTTGTGCTGGTATGCTTGGGGAGGCTTTGGAGCTTTTAGGGAAAATGGTGGTTAGAGGTACGAAGCCCGATGCCATCACAGTTAATATAGTAATTGATGCATACTGTAAGCAAGGTAAGGTTAACATTGCTATTCAACTTATGGACAGATTGAGTGCAGGGAAATGGCACCCAGATATAATTGCTTACACTAGTCTTATAAGTGGGATCTGTACACATATAGGTGTGGAAGAGGCCATTGTTTATCTTAGGAGGATGTTAAGTGAAGGGATCTCACCCAATGTTGCCACATGGAATGTTCTAGTGCGGCATTTATTTAGCAACATGGGTCATTCAGGAGCTGTTCAATTTCTAGATGCTGTATTGGGTAGTGGATTTGAGACAAGATTCTGA 2001 0.4023 MHLKEGCSLLLKVRKPSIPFVLSTNPVPNLKAENEEKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGFETRF* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 25 166 IPR011990 GO:0005515
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 242 330 IPR011990 GO:0005515
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 331 422 IPR011990 GO:0005515
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 556 652 IPR011990 GO:0005515
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 317 351 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 248 281 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 116 145 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 182 216 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 527 561 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 217 238 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 457 491 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 352 386 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 562 595 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 598 631 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 422 456 IPR002885 -
Vvi5g0041 666 NCBIfam pentatricopeptide repeat 493 525 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi5g0041 666 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 295 530 - -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 419 467 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 349 398 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 525 573 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 179 228 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 594 641 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat family 244 292 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat 493 522 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 434 555 IPR011990 GO:0005515
Vvi5g0041 666 Gene3D Tetratricopeptide repeat domain 167 241 IPR011990 GO:0005515
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Vvi5g0041 666 Pfam PPR repeat 310 342 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Vvi5g0041 666 Pfam Pentatricopeptide repeat domain 98 156 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vvi5g0041 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0041 276 663 Glycosyltransferase AT1G05670 26.531 3.15e-42 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0041 - - vvi:100248321 1338.94