Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0040 ATGGATGCACTTGTACGGACGCCACATATTACGACAAATCTCACTCCAAAGCTCATTAGACTGGTGGGCAATGGAGGGATTACATGGAACCAAACCCCTTTTTTGACATTCTCAAAAGGGTACTCTTCAATTTCTGCAAATAGGCTAAGAAAATCAGTGGTTGCTGAGGCAAAGAAGAGGAAGAAAGACAGCGTCGATGCCCACAACTTCGTCCCCAAACCAGATGAAGCCACCGGCGTTTTCCCTGAAGCTGTGCTGCTCAAAGAGAAGAAAGCTCAGGAAGATGGTAGTTTTCTCCCAGAGTTTGCAGATGCTGAAGAAGAAGAACTTTATGAATTTCTGAATCTTCAGCTGGAAAGTGATTTGAATGTGGAACGAATGCGCCACTATGAAGTGGTTTATTTAATACATGAGAAGCATGATGAGGAGGTTGAGAATGTCAATTCCAAAGTGCAAGATTTTATAAGGGAGAAAAAGGGTAAGCTTTGGCGACTGAACGATTGGGGTCTTCGAAGACTAGCGTACAAGATACAGAAAGCAAAGAATGCCCACTACATCTTGATGAACTTCGAGCTGGAAGCCCAATGGATTAATGATTTCAAGACCATGCTAGACCAAGACGAAAGAGTCATCCGGCACCTTGTAATAAAGAGAGACGAGGCAATCACAGAGGACTGCCCCCCTCCTCCTGAGTTCCACACTCTTCGAGCAGGTACCGATGATTATGATGACGAGGAGGATGATGTAGACTATGATGATGAAGATGATTGGGATGGTGAGGGTGAGGTGGACTCAAACAGCTACAGTGATGATGTCGTAGATGTTATTGTTCCTGTCAACAGTGATGATAGAGAAGATAAGAATGTTGGAAGGAGAAACTTGAGAGCTGAGAAAGTAGGTAGGTAG 906 0.4415 MDALVRTPHITTNLTPKLIRLVGNGGITWNQTPFLTFSKGYSSISANRLRKSVVAEAKKRKKDSVDAHNFVPKPDEATGVFPEAVLLKEKKAQEDGSFLPEFADAEEEELYEFLNLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIREKKGKLWRLNDWGLRRLAYKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRAGTDDYDDEEDDVDYDDEDDWDGEGEVDSNSYSDDVVDVIVPVNSDDREDKNVGRRNLRAEKVGR* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0040 301 MobiDBLite consensus disorder prediction 277 301 - -
Vvi5g0040 301 FunFam 30S ribosomal protein S6 127 221 - -
Vvi5g0040 301 Coils Coil 137 157 - -
Vvi5g0040 301 MobiDBLite consensus disorder prediction 241 267 - -
Vvi5g0040 301 SUPERFAMILY Ribosomal protein S6 127 227 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g0040 301 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 122 238 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g0040 301 Hamap 30S ribosomal protein S6 [rpsF]. 127 220 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g0040 301 Gene3D - 122 225 IPR014717 -
Vvi5g0040 301 CDD bS6 129 218 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g0040 301 MobiDBLite consensus disorder prediction 223 301 - -
Vvi5g0040 301 Pfam Ribosomal protein S6 129 217 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g0040 301 NCBIfam 30S ribosomal protein S6 127 219 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0040 - - vvi:100243195 540.421