Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0039 ATGGCTCGTAAGGGAAATCAACAGAAGAATGGGTTAGATCGCCATTCATCCAACCACAAGAGAAAGGTTTCAGATTCAGGGCGTGGAGTGCCAGATACAAAAGAAAGGGTCCAAACAGGTGAGGTGAAGATCGTCGCTGGAGAGGAGCTCCCAAATGGTAACCAAGCAAGCAATCCTTTGACAGAAACTGCGAATAAAACTAGTTCGGCAGGAGATGAGAAGAAAAGCAAACAAAGATCTGGGAAATCTCTTAGAAAGGAGAAGCAAGAAATGGATACAACCCATGGTCTGGACCATTCAGTACCTCCTGGGAGTAATCCAGGAGAATGTGCTGGGAATCAATTTATGACCGAGGCTTTCAGCATAAGAGAAGAAAATGGGACGTCCCCTAGGACTAACAATGGTTCAAAACATCCAAGTGGTAGTTCAGGATGCTCGCCAAATGGATTGCCTTCAGAAAAAGCAATGAAAAATTCTGAGTTCTCTGATACTATGGTGGTTAGAAGTTTGAGGGCTTCAGCATTGTCCATCTTGAAGGCAGCTAATGAATGGTTAGAGAGGCAGAAACCATTCTTCATCAGTCTAAATATCAGGATATTAAATGCACGTGATTGTATTCGTATGAAGATTGAGCAAACATATCCTATTATTTTGAAATGGCTTATGTATTTTGGGAACATAATGCTTCTTCTGTCAATGGTTTGGTTGGACTGTACTATCAGGGGAATTGACTCCTTTTTGCGAATGGGGACAACGTCCTTTTTCTCAGTCATATGGTGCAGCATTTTCTCGGTAGTTGCAATGATCGGGATGTCTAAGTTTCTTATTATCCTGATCGTATCTGTTTTGATGGGAGTTTTTCTCGGGTTCACCCTTGCAAGTTTGGTAATTGCCATTTCTGGGGTTGTTATTTTGTGGATTTATGGAAGTTTTTGGACAACAGCCCTTATCATCTTTTGTGGAGGGTTGGCATTCACATTGAGCCATGAGCGTGCTGCCCTATTAATTACCACCATATATTCTGTGTACTGTGCTTGGACATACGTTGGATGGCTTGGTTTGATTGTTGCTTTGAATCTGTCCTTCATCTCAAGTGATGCTTTGATATATCTCCTGAAGAATACTACGAATGAGCATAGAAGATCCAGCAGGCCTCCCGAACAAACAGCTGGAATGCGAGGTCGGCCAGGCTTTTTCAATGGAGAGCAACCGCATGCTTCATTTTCTGAAACAGGTTCAGAGCAAGCACCCGATCGTAGTGCAGGAGTAACTTCAACCAGTGGGGCTGACTCTGAGATAACTTCTGAAGAGGAAGTTGTTCGGTTATTAAACTGTACTGATCACTATTCAGCATTGGGCTTGTCCCGTTTTGAGAACATAGACGTTTCTCTACTAAAGCGGGAATATAGGAAAAAGGCAATGCTTGTCCATCCTGATAAAAACATGGGCAACGAGAAGGCTGCAGAAGCTTTTAAAAAGCTTCAAAATGCATATGAGGTTTTACTTGATTCTCTGAAGCGAAAGGCATATGATGATGAATTAAGGAGGGAGGAACTGCTGAACTGTTTCCGTAGATTTCAGACTGCCTCTCAAAAGAATGGAAGGCATGGTCCTTTTACCTCTGGAATCCCCCGCTCAGAAGCTGAAGTTGAGGACCCCTTTGGAGAGTCGAGACGAATAGCCTGCAAAAAGTGTGGCAACTTTCATGTTTGGGTTCACACCAAGAAAACAAAATCTCGAGCAAGATGGTGCCAGGATTGCAAGGATTTTCATCAGGCCAAGGATGGAGATGGATGGGTTGAACAGTCTACCCAACCCTTCTTTTTTGGAATATTGCAAAAGGTGGATGCACCTTCAGCATATGTTTGTGCTGAGAGCCGGATATACGATGCAACCGAATGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACTCACAAGCCAAGTTTTCATGTGAACACTAGCGTAACTTCCAAGCATAATGGCAGTAAGGGAACGAGCTCAGGACAAAAAGGAGGAATGCCAACACCTAACATGGAAGAGAACATGACCGAGGAGGAATTCTTCGAGTGGTTGCAGAATGCGGTCCAAGCAGGCATGTTTGATACTTGTGGTGGCAGCACCTCTGCCGAAAGTCCATCTGCCAAGGCAGGAAATTTCTCCAAGAGCGGTGGCACAAACAGTGGCAGTGGTAGTGGTAGTGGCAGCAAGAGAAAGAAAAAGGGAAAGAAACAATGGTGA 2244 0.4394 MARKGNQQKNGLDRHSSNHKRKVSDSGRGVPDTKERVQTGEVKIVAGEELPNGNQASNPLTETANKTSSAGDEKKSKQRSGKSLRKEKQEMDTTHGLDHSVPPGSNPGECAGNQFMTEAFSIREENGTSPRTNNGSKHPSGSSGCSPNGLPSEKAMKNSEFSDTMVVRSLRASALSILKAANEWLERQKPFFISLNIRILNARDCIRMKIEQTYPIILKWLMYFGNIMLLLSMVWLDCTIRGIDSFLRMGTTSFFSVIWCSIFSVVAMIGMSKFLIILIVSVLMGVFLGFTLASLVIAISGVVILWIYGSFWTTALIIFCGGLAFTLSHERAALLITTIYSVYCAWTYVGWLGLIVALNLSFISSDALIYLLKNTTNEHRRSSRPPEQTAGMRGRPGFFNGEQPHASFSETGSEQAPDRSAGVTSTSGADSEITSEEEVVRLLNCTDHYSALGLSRFENIDVSLLKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDDELRREELLNCFRRFQTASQKNGRHGPFTSGIPRSEAEVEDPFGESRRIACKKCGNFHVWVHTKKTKSRARWCQDCKDFHQAKDGDGWVEQSTQPFFFGILQKVDAPSAYVCAESRIYDATEWYICQGMRCPANTHKPSFHVNTSVTSKHNGSKGTSSGQKGGMPTPNMEENMTEEEFFEWLQNAVQAGMFDTCGGSTSAESPSAKAGNFSKSGGTNSGSGSGSGSKRKKKGKKQW* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0039 747 MobiDBLite consensus disorder prediction 653 680 - -
Vvi5g0039 747 ProSiteProfiles dnaJ domain profile. 447 514 IPR001623 -
Vvi5g0039 747 CDD DnaJ 447 503 IPR001623 -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 703 747 - -
Vvi5g0039 747 PRINTS DnaJ domain signature 469 484 IPR001623 -
Vvi5g0039 747 PRINTS DnaJ domain signature 486 506 IPR001623 -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 653 678 - -
Vvi5g0039 747 Pfam DnaJ domain 447 511 IPR001623 -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 51 67 - -
Vvi5g0039 747 PANTHER OS03G0832900 PROTEIN 1 747 - -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 68 95 - -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 8 42 - -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 125 154 - -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 404 432 - -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 1 112 - -
Vvi5g0039 747 SUPERFAMILY Chaperone J-domain 416 510 IPR036869 -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 403 432 - -
Vvi5g0039 747 Gene3D DnaJ domain 434 530 IPR036869 -
Vvi5g0039 747 MobiDBLite consensus disorder prediction 703 736 - -
Vvi5g0039 747 Pfam Cleavage inducing molecular chaperone 556 654 IPR032843 -
Vvi5g0039 747 ProSitePatterns Nt-dnaJ domain signature. 491 510 IPR018253 -
Vvi5g0039 747 SMART dnaj_3 446 506 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0039 Vvi-Chr5 389645 396051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0039 1 703 Miscellaneous Gene Families AT5G49580 52.327 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0039 K09534 - vvi:100246610 1437.55