Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0030 ATGTTCTTCTCCGGAGATTCGTCGACTAGGAAGCGAGTCGATTTAGGCGGTCGAAGTTCGAAGGAAAGGGATAGGCAAAAGCTTCTGGAGCAGACGCGGTTGGAGCGGAACCGGCGATGGTGGTTGCGTCAGCAAAACTCCGCCGCACTCAGGATTCAGAAATGCTTCAGAGGTAGAAAGGCTGTGGAAGCTGAACACGCAAAGGTGCGGGAACAGTTCTTTACAACTTATGGAAGGCACTGTCAAAATGTAGACAGGCATTCTTTTGGTCCAGACTCAGAGTTCCTCCGCCAGTTACTCTTTTTCTTTGATGCACGAAATGTTGGTGATTTTTCAGCTCTCGTGGAGACATGTCGACTACTTCAGAATTTTGTTCGAGATAGCGGGGATGCTGTGAACCTGTTTGCAGGCATGGATTATTCATCCAAGAATGCTCTGGTTGATTACAGGGTGAAGCAACTTGCATATGCTTGTATCCAGGCTGTTCATCAGAATAGGAATCAATTCAAGGGGCAACTTTTGATGACATCTGATGAGCCCAGTTCACCTACAATTCTATTGCTAGAGGCAGTAGTTATGTTATTAGATTCAAAACTTCCATGGGTTTGTAAGATAGTTGGCCATCTCTTGCAGAGAAATACATACTCCCTCTTGAGAGAGATTGTACTTACTGCAAAGGAAAGTGTGGAAACTTATTCCACTGGGAGAGTACCTTCACTGGAATGTCTGCTTACCATTCTTATTTCTCACGTTGGTCAGAACCACTGTATCTGTCCAATTATAGATCCACGGTGGAGTTTCTCATCTCAGATTCTAACAATTCCTTTCTTGTGGGCGCTTTTCCCATACTTAAAAGAGGTTTTTATGAGACGGGGCTTGAGCGAACATTACATCCATCAGATGGCATTGTGTGTGCAAAATCATACTAATGTTCTACCTGATGATATCTCAGCCGATTTTCCAGGTTATGCATGTCTTCTTGGAAATATATTGGAAACTGCTTCAGTGTTCTTTTCTCAGCCTGACTGCTCATTGGACATGGCTATAGACATTGCAGCTGTCATGACATTTTTGTTACAGGCACTTCCTCCAATGAAATCATCAAATAGAGAAAGTAAAGAAAATTCCTCAGGAGGTGAGGATGAAATGGCTGTGGGTGATGAAATAATGGAAAAAGTTGTGAGCAGGGATTTGGAACAACAAATATCCAATGCAATAGATCCGCGTTTTCTTCTGCAACTGACAAATGCTCTATTTGGAGGGATTTCACTCATCAATCATTTGTGTGAAGAAGGGCCAGATGATAGAGAGGTGGCAGCTATTGGTGCTGCTTGTGCTTTTCTGCATGTTACTTTCAACATTTTACCTCTTGAGCGTATTATGACCGTACTAGCTTACAGAACTGAACTTGTTCCACTGCTTTGGAAATTTATAAAGCGATGCCATGAGAACCAAAAATGGTCATCTTTGTCGGAGCAGTTAGCTTATCTGTCAGGAGATATGCCTGGATGGCAATTACCTCTAGCTGTTTTCTGCCCTGTGTATAAGCACATGCTTACAATAGTTGACAATGAAGAATTCTATGAGCAGGAGAAACCACTATCACTGTCGGATATCAGATGCTTAATTGTTATTTTGAGACAGGCCTTATGGCAGCTCCTATGGGTGAATCCTGCCATGCCCCCTAACCTAATGAAACCTGCCCCTGAGGTCACCTCTCATAGGGGGCACCCCATAGAATTCACTCAACAGAGGGTTAGCATTGTAACTGCTGAGCTACTCTCTCAGTTGCAAGATTGGAACAATAGGAGGCAATTTGCACCTCCCAGTTACTTTCATGCTGATGCTGTCAATGAGTATTTTATTTCTCAGGCTGTGATAGAAAACACCAGAGCATATACTATATTGAAACAAGCTCCATTCTTGGTGCCATTTACAAGCAGAGTTAAAATATTTACTTCACAGTTAGCAGCAGCAAGGCAAAGGGATGGGTCTCATTCTGTTTTTACTAGAAACCGATTTAGAATTCGGCGGGATCATATCCTTGAAGATGCTTTTAATCAATTGAGTGTGTTGTCTGAAGATGATCTTCGAGGATTGATCCGAATATCATTTGTCAATGAATTTGGAGTTGAGGAGGCTGGTATTGATGGTGGTGGGATTTTCAAGGATTTCATGGAAAACATTACACGAGCAGCTTTTGACGTGCAGTATGGGTTGTTTAAGGAAACAGCTGATCACCTACTCTACCCAAATCCTGGGTCAGGAATGATACACGAACAGCATCTCCAGTTTTTCCATTTTCTTGGAACTGTTCTTGGGAAGGCCATGTTTGAAGGGATTCTTGTGGATATACCATTTGCAACATTCTTTTTGAGCAAATTAAAACAAAAGCACAACTATTTGAATGATTTGCCTTCATTGGACCCAGAATTATACCGCCACCTTATTTTCTTAAAGCATTTTGAAGGTGACTTATCAGAATTGGAACTTTATTTTGTTATTGTAAATAATGAATACGGGGAACAAACAGAGGAGGAGCTGCTTCCTGGAGGAAAAAATATCCGTGTTACTAATGAGAATGTCATCACATTTATTCATCTTATAGCAAACCATCGTTTGAATTTTCAGATACGTCAGCAAAGTACTCATTTCTTGAGGGGTTTTCAGCAACTTATACAAAGAGATTGGATTGAAATGTTTGATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGATGGCTTGGATGTTGATGACCTACGATCTAATACCAATTATGCTGGTGGCTATCATAGTGAACACTATGTCATTGAGACGTTCTGGGAAGTTCTCAAAAGTTTTACCTTGGAAAATCAGATGAAGTTTCTAAAGTTTGTGACCGGGTGCTCTCGAGGCCCACTGCTTGGATTCAAATACCTTGAGCCTTTATTTTGCATACAAAGGGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGACCGGTTACCAACATCTGCTACTTGCATGAATCTCTTAAAGCTTCCACCATACAGAAGCAAAGAACAAATGGCAACAAAATTGTTGTATGCGATAAATGCGGATGCGGGTTTTGATTTGAGCTGA 3105 0.4161 MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRKAVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRLLQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLMTSDEPSSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYSTGRVPSLECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLSEHYIHQMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAVMTFLLQALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQLTNALFGGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLLWKFIKRCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLSDIRCLIVILRQALWQLLWVNPAMPPNLMKPAPEVTSHRGHPIEFTQQRVSIVTAELLSQLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVKIFTSQLAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTVLGKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELELYFVIVNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQQLIQRDWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIETFWEVLKSFTLENQMKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMATKLLYAINADAGFDLS* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0030 1034 SMART hect_3 691 1034 IPR000569 GO:0004842
Vvi5g0030 1034 Pfam HECT-domain (ubiquitin-transferase) 729 1034 IPR000569 GO:0004842
Vvi5g0030 1034 Gene3D Hect, E3 ligase catalytic domain 798 877 - -
Vvi5g0030 1034 CDD HECTc 672 1032 IPR000569 GO:0004842
Vvi5g0030 1034 SUPERFAMILY Hect, E3 ligase catalytic domain 666 1026 IPR035983 GO:0004842
Vvi5g0030 1034 FunFam Putative Ubiquitin-protein ligase E3C 916 1033 - -
Vvi5g0030 1034 Gene3D Hect, E3 ligase catalytic domains 674 912 - -
Vvi5g0030 1034 MobiDBLite consensus disorder prediction 1 24 - -
Vvi5g0030 1034 Gene3D Hect, E3 ligase catalytic domain 916 1033 - -
Vvi5g0030 1034 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1034 IPR044611 GO:0000209|GO:0061630
Vvi5g0030 1034 FunFam Putative Ubiquitin-protein ligase E3C 798 877 - -
Vvi5g0030 1034 ProSiteProfiles HECT domain profile. 693 1034 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0030 Vvi-Chr5 272121 307817 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0030 K10589 - vvi:100243032 2066.97