Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0029 ATGGTGAAGGTCCGAATGAACACGGCCGACGTGGCCGCGGAGATCAAGTGCTTGCGACGATTAATCGGCATGCGTTGTGCCAACGTCTACGATCTCTCTCCCAAAACTTATATGTTTAAGCTTATGAACAGTAGTGGCGTCACTGAATCCGGAGAGAGCGAGAAGGTTTTGTTGTTGATGGAAAGTGGTGTTAGATTGCATACCACTGCATATGTTCGGGACAAAAGTATGACTCCATCTGGGTTTACTCTTAAATTAAGAAAGCACATACGCACAAGAAGGCTAGAGGATGTGCGGCAGCTGGGATATGATCGGGTTGTCCTTTTTCAATTTGGACTTGGTGCTAATGCACACTATGTTATATTGGAGCTGTATGCCCAAGGAAACATTCTCCTTACAGATTCTGAGTTTATGGTCATGACTCTTCTTCGATCACACAGAGATGATGATAAAGGAGTTGCAATCATGTCACGCCATCGGTATCCAGTTGAAATTTGTCGAGTTTTTGAGCGTACTGCCACTACTAAGTTGCAAGCAGCCCTTACATCTCCCAAGGAATCTGAGAGCAATGAAGCAGTCGAGGCCAGTGAGGGTGGAAATAAAGTGTCTGATGCGCCTAGAGAGAAGCAGGGTAACAACAAAGGTGTGAAGTCATCTGAGCCAAGCAAAAATACTAATGATGGTGCTCGTGCCAAGCAAGCGACCTTGAAGACTGTTCTTGGAGAGGCACTGGGTTATGGGCCTGCACTTTCTGAGCATATTATTTTGGATGCTGGTCTGATTCCAAACACAAAAGTTACTAAGGATAGCAAATTTGACATTGATACAATTCAGCGTTTAGCCCAATCTGTCACTAAGTTTGAGAACTGGCTAGAAGATGTTATCTCGGGTGATCAAGTTCCTGAAGGTTATATTTTAATGCAGAATAAAATTTTTGGAAAGGACTGCCCCCCATCTCAACCAGATCGTGGTAGTCAGATCTATGATGAATTCTGCCCAATTTTGTTGAACCAGTTCAAATCAAGGGAGTTTGTAAAATTTGAGACTTTTGATGCTGCATTGGATGAGTTCTACAGTAAAATTGAGAGTCAACGATCAGAACAACAACAAAAGGCAAAAGAGGGCTCTGCCATGCAGAAACTCACTAAAATACGCGTGGATCAGGAAAATCGTGTGCATACACTGAAGAAGGAGGTTGACCACTGCATTAAAATGGCAGAATTGATAGAATATAACCTAGAAGATGTTGATGCTGCCATATTAGCTGTCCGTGTTGCTTTGGCAAATGGTATGAATTGGGAGGATCTTGCCCGAATGGTGAAAGAAGAGAAAAAATCTGGAAATCCTGTAGCTGGCCTCATTGACAAGCTTTATCTTGAGAGAAATTGCATGACACTGCTGTTGAGTAATAACCTTGATGAAATGGATGATGATGAAAAGACACTTCCTGTGGATAAGGTAGAAGTTGATTTGGCACTTTCAGCACATGCCAATGCTCGGCGGTGGTATGAACAGAAGAAAAGGCAGGAAAACAAGCAGGAAAAGACTGTTATAGCTCATGAAAAAGCTTTTAAGGCTGCTGAAAAGAAGACTCGCCTCCAGCTTTCACAGGAAAAAACCGTAGCCACAATTTCACATATGCGAAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATCAGCAGTGAGAATTATTTGGTTATCAGTGGGCGTGATGCTCAACAGAACGAGATGATTGTCAAGCGTTATATGTCAAAAGGGGACCTGTATATCCATGCAGATCTACATGGAGCTTCAAGTACTGTGATCAAGAACCACAAGCCTGAACATCCAGTACCCCCTCTTACTTTGAACCAAGCAGGATGTTTCACTGTTTGTCACAGCCAGGCATGGGATTCAAAGATTGTCACAAGTGCTTGGTGGGTTTATCCTCACCAGGTCAGTAAAACTGCTCCTACTGGAGAATATCTTACAGTTGGGAGTTTCATGATCCGTGGGAAGAAGAACTTTCTTCCTCCACACCCTCTTATAATGGGCTTTGGCTTGTTATTTCGCTTAGATGAGAGCTCCTTGGGATCACATTTAAATGAAAGGCGGGTGAGAGGTGAGGAGGAAGGGGCACAAGATTTTGAGGAGAATGAATCTCTTAAAGGAAATTCTGATTCTGAGTCAGAGAAGGAAGAAACAGATGAAAAACGTACTGCAGAGTCAAAAAGCATAATGGATCCATCAACACATCAGCCAATATTAGAAGGCTTTTCTGAAATTAGTTCTGCTCATAATGAATTGACAACCTCCAATGTTGGATCCATCAATTTGCCTGAAGTTCCTCTTGAAGAGAGGAATATGTTGAATGGAAATGATAGTGAGCATATAGCTGATATTTCTGGAGGACATGTTTCTTCTGTCAATCCACAACTTGAGGATCTCATTGATAGGGCTCTTGAACTTGGATCTAATACTGCATCTGGTAAGAAGTATGCTCTTGAAACTTCTCAAGTTGATTTGGAAGAACACAATCATGAAGACAGAAAGGCTACAGTCAGAGAGAAACCTTATATTTCAAAAGCTGAAAGAAGAAAGCTCAAGAAAGGCCAGAAAACCAGTACTTCAGATGCGGGTGGTGATCATGGACAAGAAGAAATTGAAGAAAATAACGTCTCAACCAGTCAGCCAGACAAAGATGTCAAAAACTCACAGCCAGCTGGTGGGAAAATCAGCCGTGGGCAGAAGGGTAAGCTCAAGAAGATGAAAGAGAAGTATGCAGATCAGGATGAGGAAGAGAGAAGCATCCGTATGGCTTTACTAGCTTCTGCCGGAAGAGCACACAAGATTGATAAAGAGAAAGAAAATGAGAATGCAGATACAGGCAAAGGAATGAAACCAGTTAATGGCCCTGAAGAGGCACCAAAAATATGTTACAAATGTAAGAAGGTTGGTCACTTGTCCCGTGATTGTCCAGAACATCCAGATGGAACAATCCATAGCCACTCTAATGGAGTTGAAGATCGGCGTGTAGATTTAGACAATAGTGCCACTGAGATGGACCGAGTAGCCATGGAGGAAGATGACATTCATGAGATAGGTGAAGAAGAGAAAGGAAAATTGAATGATGTGGACTACTTGACTGGCAATCCACTGCCTAATGATATTCTCTTATATGCGGTGCCTGTCTGTGGTCCTTATAGTGCATTGCAAACATATAAATACCGTGTGAAGATAATTCCAGGCACAGCAAAGAAAGGAAAAGCTGCAAAAACTGCCATGAATTTGTTTAGCCACATGCCTGAAGCAACAAGCAGAGAGAAGGAATTGATGAAAGCATGTACAGATCCCGAGCTGGTCGCTGCTATTATTGGAAACGTGAAGATTACAGCTGCAGGCCTTACCCAGTTGAAGCAGAAGCAGAAGAAAGGCAAGAAAAGCAGCAAAGCAAGTTAG 3441 0.4246 MVKVRMNTADVAAEIKCLRRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYVRDKSMTPSGFTLKLRKHIRTRRLEDVRQLGYDRVVLFQFGLGANAHYVILELYAQGNILLTDSEFMVMTLLRSHRDDDKGVAIMSRHRYPVEICRVFERTATTKLQAALTSPKESESNEAVEASEGGNKVSDAPREKQGNNKGVKSSEPSKNTNDGARAKQATLKTVLGEALGYGPALSEHIILDAGLIPNTKVTKDSKFDIDTIQRLAQSVTKFENWLEDVISGDQVPEGYILMQNKIFGKDCPPSQPDRGSQIYDEFCPILLNQFKSREFVKFETFDAALDEFYSKIESQRSEQQQKAKEGSAMQKLTKIRVDQENRVHTLKKEVDHCIKMAELIEYNLEDVDAAILAVRVALANGMNWEDLARMVKEEKKSGNPVAGLIDKLYLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKRQENKQEKTVIAHEKAFKAAEKKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYIHADLHGASSTVIKNHKPEHPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGAQDFEENESLKGNSDSESEKEETDEKRTAESKSIMDPSTHQPILEGFSEISSAHNELTTSNVGSINLPEVPLEERNMLNGNDSEHIADISGGHVSSVNPQLEDLIDRALELGSNTASGKKYALETSQVDLEEHNHEDRKATVREKPYISKAERRKLKKGQKTSTSDAGGDHGQEEIEENNVSTSQPDKDVKNSQPAGGKISRGQKGKLKKMKEKYADQDEEERSIRMALLASAGRAHKIDKEKENENADTGKGMKPVNGPEEAPKICYKCKKVGHLSRDCPEHPDGTIHSHSNGVEDRRVDLDNSATEMDRVAMEEDDIHEIGEEEKGKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQTYKYRVKIIPGTAKKGKAAKTAMNLFSHMPEATSREKELMKACTDPELVAAIIGNVKITAAGLTQLKQKQKKGKKSSKAS* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0029 1146 ProSiteProfiles Zinc finger CCHC-type profile. 973 988 IPR001878 GO:0003676|GO:0008270
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 179 196 - -
Vvi5g0029 1146 Pfam NFACT N-terminal and middle domains 225 548 - -
Vvi5g0029 1146 Pfam NFACT N-terminal and middle domains 18 149 - -
Vvi5g0029 1146 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Vvi5g0029 1146 Pfam NFACT protein RNA binding domain 555 666 IPR008532 -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 874 890 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 179 231 - -
Vvi5g0029 1146 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1123 - -
Vvi5g0029 1146 Coils Coil 378 398 - -
Vvi5g0029 1146 Gene3D - 967 1016 - -
Vvi5g0029 1146 SMART c2hcfinal6 972 988 IPR001878 GO:0003676|GO:0008270
Vvi5g0029 1146 Pfam NFACT protein C-terminal domain 1033 1124 IPR021846 -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 697 739 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 834 867 - -
Vvi5g0029 1146 FunFam nuclear export mediator factor Nemf 6 163 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 941 956 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 697 746 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 940 964 - -
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 215 231 - -
Vvi5g0029 1146 Pfam Zinc knuckle 972 988 IPR001878 GO:0003676|GO:0008270
Vvi5g0029 1146 MobiDBLite consensus disorder prediction 834 928 - -
Vvi5g0029 1146 SUPERFAMILY Retrovirus zinc finger-like domains 964 992 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0029 Vvi-Chr5 262346 271036 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0029 K24971 - vvi:100267050 2181.37