Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0028 ATGGCGTGTTTGGCACAGCAATTCACAGGGCTGAGGTGCCCACCTATCTCTTCTTCACGCCTTTCCAAACCCTTCTCTCCAAAACAACCCCAGAAGCCCAGCTTTGTTCGCATAGTCTCCGCTGTGGCAATCTCAAATGCCCAGACCAAAGAGAGGCTCAAGCTCAAAGAAATGTTTGAAGACGCCTACGAGCGATGCCGTACTGCTCCAACTGAAGGTGTCTCCTTCTCTGCCGACGATTTCTACTCCGCTCTCGACAAGTACGACTTCAATTCCGAAATTGGCACCAAGGTTAAGGGAACGGTGTTTTGCACCGACACCAATGGGGCACTTGTAGACATTACTGCAAAATCTTCAGCATATTTGCCGGTTTATGAGGCATGCATTCACAAAATAAAACACGTAGAAGAAGCTGGGATTGTTCCTGGTGTGAGGGAGGAGTTTGTGATTATTGGTGAAAATGAAGCTGATGATAGCTTGATCTTGAGCTTAAGGTCAATCCAGTATGATCTTGCATGGGAACGATGTAGACAGCTTCAGGCTGAGGATGTTGTTGTGAAGGGTAAGGTTGTAGGTGCAAATAAAGGTGGAGTGGTGGCATTGGTGGAGGGTCTTCGTGGGTTTGTTCCTTTCTCACAGATATCATCAAAAACAACTGCTGAAGAGCTTCTTGATAAAGAACTTCCCGTGAAGTTTGTGGAGGTTGATGAGGAACAGTCTAGGCTTGTTCTCAGCAACCGCAAGGCCATGGCAGACAGCCAGGCACAGCTAGGAATCGGATCAGTGGTTACTGGAACTGTTCAGAGTCTGAAACCATACGGTGCCTTCATCGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTCTCAGATATTGCCACAGTTCTTCAACCTGGTGACATCCTCAAGGTTATGATCCTGAGCCACGACCGTGAGAGAGGCCGTGTAAGTCTCTCAACTAAGAAGTTAGAACCTACCCCTGGAGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGGCAGAGAATAGCTCAAGCAGAAGCTATGGCTCGGGCAGACATGCTAAGATTCCAACCTGAGAGTGGATTAACTCTCAATTCGGATGGAATCTTGGGCCCCGTTTCCGCCGACTTGCCAGCAGAGGGTCTAGATCTAAGTGATGTTCCTCCTGCTGAAGACTCTTGA 1233 0.4793 MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSFVRIVSAVAISNAQTKERLKLKEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLNSDGILGPVSADLPAEGLDLSDVPPAEDS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0028 410 PANTHER 30S RIBOSOMAL PROTEIN S1 50 396 - -
Vvi5g0028 410 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Vvi5g0028 410 Gene3D - 254 332 IPR012340 -
Vvi5g0028 410 SUPERFAMILY Nucleic acid-binding proteins 90 191 IPR012340 -
Vvi5g0028 410 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Vvi5g0028 410 Gene3D - 176 253 IPR012340 -
Vvi5g0028 410 Gene3D - 79 175 IPR012340 -
Vvi5g0028 410 CDD S1_RPS1_repeat_ec2_hs2 194 247 - -
Vvi5g0028 410 FunFam 30S ribosomal protein S1, chloroplastic 177 253 - -
Vvi5g0028 410 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Vvi5g0028 410 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Vvi5g0028 410 Coils Coil 345 365 - -
Vvi5g0028 410 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Vvi5g0028 410 CDD S1_RPS1_repeat_hs4 260 328 - -
Vvi5g0028 410 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Vvi5g0028 410 FunFam 30S ribosomal protein S1 79 176 - -
Vvi5g0028 410 SUPERFAMILY Nucleic acid-binding proteins 178 251 IPR012340 -
Vvi5g0028 410 SMART S1_6 93 165 IPR022967 -
Vvi5g0028 410 SMART S1_6 258 328 IPR022967 -
Vvi5g0028 410 SMART S1_6 181 247 IPR022967 -
Vvi5g0028 410 FunFam 30S ribosomal protein S1 256 335 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0028 K02945 - vvi:100265325 772.696