Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0027 ATGGATGTAACTACTGATAGAGCATACGTCACTTTCTTAGCTGGAAATGGCGACTATGTGAAGGGAGTGGTGGGGTTGGCAAAGGGTTTGAGGAAGGTCCGGAGCCTGTACCCACTAGTGGTGCCTGTTCTGCCTGATGTGCCGGAGGAGCACCGCCAGATTCTGAAGTCACAAGGGTGTATTGTGAGGGAGATTGAGCCTGTGTACCCGCCGGAGAACCAGACCCAGTTTTCCATGGCTTATTACGTCATCAACTACTCAAAGCTTCGTATTTGGGAATTCGTGGAGTACAGCAAGATGATATACTTGGATGGAGACATACAAGTATTCGAAAACATCGACCACCTCTTTGACTCACAAGACGGCCATTTCTATGCTGTGAAGGACTGTTTTTGTGAGCAGACATGGAGTCATTCCACCCAGTACAAAATTGGCTACTGTCAGCAGTGCCCGAACAAGGTGGAGTGGAAGGCCGAGCTTGGCCCTCCACCGCCGCTCTACTTCAACGCCGGCATGTTCGTCTTCGAGCCCAGTCTCTCTACCTACTCTAATCTCCTCGACACTCTCAAAGTCACCCCTCCTACTTCATTTGCCGAGCAGGACTTTCTGAACATGTTTTTCAGAGACGTCTACGTTCCAATCCCTTCTGAATACAACCTTGTGTTGGCCATGCTGTGGCGGCACCCCGAAAATGTGGACCTCACCAAAGCCAAAGTGGTTCACTATTGTGCGGCGGGATCGAAGCCGTGGAGGTTCACAGGGAAGGAGGAAAACATGGAGAGAGAAGATATAAAGGAGTTGGTGAGGAAATGGTGGGAAATATATGAAGATGAGACATTGGATTATAAGACAAGCTTGAAGGATCATGATGACGAGAAGCCAAGCCAGGATGCGCTTCTTACCGCAATGTGTGAAGCTGGGCTTGTGCCCATCAGGCCCGCTCCTCGAGCTGCATAG 957 0.5016 MDVTTDRAYVTFLAGNGDYVKGVVGLAKGLRKVRSLYPLVVPVLPDVPEEHRQILKSQGCIVREIEPVYPPENQTQFSMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDSQDGHFYAVKDCFCEQTWSHSTQYKIGYCQQCPNKVEWKAELGPPPPLYFNAGMFVFEPSLSTYSNLLDTLKVTPPTSFAEQDFLNMFFRDVYVPIPSEYNLVLAMLWRHPENVDLTKAKVVHYCAAGSKPWRFTGKEENMEREDIKELVRKWWEIYEDETLDYKTSLKDHDDEKPSQDALLTAMCEAGLVPIRPAPRAA* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0027 318 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 4 281 IPR029044 -
Vvi5g0027 318 PANTHER GLYCOGENIN SUBFAMILY MEMBER 6 280 - -
Vvi5g0027 318 FunFam Hexosyltransferase 5 283 - -
Vvi5g0027 318 CDD GT8_Glycogenin 7 277 - -
Vvi5g0027 318 Pfam Glycosyl transferase family 8 11 252 IPR002495 GO:0016757
Vvi5g0027 318 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 282 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0027 Vvi-Chr5 249473 251197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0027 7 318 Glycosyltransferase AT1G56600 73.567 4.15e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0027 K18819 - vvi:100260126 650.973