Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0025 ATGGAAGAGGCGAAGGGGGTGGTAAAGCACGTATTGCTGGCAAAATTCAAAGATTCAACCCCACCTGACCAGATTGAAGAACTCATCAAGGGCTATGCCAACCTTGTCAATCTGGTGCCTCCCATGAAAGCCTTCCACTGGGGCAAGGATGTGAGCATTGAGAACATGCATCAAGGTTTCACTCATGTCTTCGAGTCAACCTTTGAGAGCGTGGAAGGCATTGCAGAGTATGTGTCTCATCCAGCCCATGTCGAATTTGCAAATCTGTTCCTGCCCCACCTGGAGAAAGTCATTGTTTTCGACTACAAGCCCATTACAGTCCATCTCTGA 330 0.4818 MEEAKGVVKHVLLAKFKDSTPPDQIEELIKGYANLVNLVPPMKAFHWGKDVSIENMHQGFTHVFESTFESVEGIAEYVSHPAHVEFANLFLPHLEKVIVFDYKPITVHL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0025 109 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
Vvi5g0025 109 FunFam Stress-response A/B barrel domain-containing protein HS1 1 109 - -
Vvi5g0025 109 Gene3D - 1 109 - -
Vvi5g0025 109 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Vvi5g0025 109 SUPERFAMILY Dimeric alpha+beta barrel 8 103 IPR011008 -
Vvi5g0025 109 SMART Dabb_2 8 104 IPR013097 -
Vvi5g0025 109 PANTHER - 5 106 IPR044662 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0025 Vvi-Chr5 244128 246538 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0025 - - vvi:100255022 226.483